Ss1.1-Pig1-62N23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTCAAGGGACCTACCGGTGTGCTGGCCGGCCGGGCGGAGCGCGGCGGCGCAGAGCGGCT GCAGATCCTGTCCACCATGACCAGGCGCCCACGGAGCAGCAGAGCGTGGCATTTTGTCTT GAGTGCAGCCCGTCGAGACGCGGATGCCAGGGCCGTGGCTCTGGCAGGGACCCCCAACTG GGGCTACGACTCTGATGGGCAGCACAGCGACTCAGATTCCGACCCCGAGTGTCCGAACGC GCCGCCCTCCATCCCCAGCGCGGTGCCCGTGACCGGGGAGTCCTTCTGTGACTGTGACAG TCAGAGCGAGGCCTTCTGCGGCAGCCTGCACACCGCCCACCGGGGCAGGGACTGCCGCTG CGGGGAGGAGGATGAGGATTTCGACTGGGTCTGGGATGACCTGAACAAGTCCTCAGCCAC CCTGCTGAGCTGCGACAACCGCAAGGTCAGCTTCCACACGGAGTACAGCTGCGGCACGGC GGCCATCCGCGGCACCAAGGAGCTGGCCGAGGGCCAGCACTTCTGGGAGATCAAGATGAC CTCGCCCGTCTACGGCACAGACATGATGGTGGGCATTGGGACGTCAGACGTGGACCTGGA CAAGTACCATCACACGTTCTGCAGCCTGCTCGGCAGGGACGAGGACAGCTGGGGCCTCTC CTACACGGGGCTCCTCCACCACAAGGGCGACAAGACCAGCTTCTCCTCACGGTTCGGCCA GGGCTCCATCATCGGCGTCCACCTGGACACCTGGCACGGGACGCTGACCTTCTTCAAGAA CAGGAAGTGCATAGGAGTGGCAGCCACGCAGCTGCAGAACAAGAGGTTCTACCCGATGGT GTGCTCCACGGCGGCCAAGAGCAGCATGAAAGTGATCCGCTCCTGCGCCACCATCACCTC CTTGCAGTACCTGTGCTGCTACCGCCTGCGCCAGCTGCGGCCCGACTCCGGGGACACGCT CGAGGGCCTGCCCCTGCCACCCGGCCTCAAGCAGGTGCTGCACCACAAGCTGGGCTGGGT CCTGAGCATGAGCTGCGCCCACCACAAGCCCCCCGCACCTGCGCCCTCGCCGGCAGCTAG TCCCAGCAGCCCTGAGAGCCGGCGCTGCCAGAGGAAGCGCTGCCGAAGGACCTAGCTCGT TCCACCAAAATGGCCTTCTGGGCCCGGGTCAGTGGCGACGCTGCCCGCCCTTTGGACCAC CCTCCAGGGCCACGGGAGAGGGAGGCCTGGGCTGAGGTGGTCTCGGCTGCCCCCCTGCCC GCCCGAGGCTGGACGGGCCTTGTTCTGGAGGCTCTGGGGCCTCTGGGGCCTTGCCCTGTG ATCCTGAGACCAGGACCGCCCAGGTCTGTGTGCTGCCTGTGCCCCATGAGCGGCCACGGC CCCAGAACAGCCAGACGCAGGAAGCTGTGGTCTGCTGCCTGCAAGGATGGCCTCTTCCTG CCGTCTCTGGCCTCGGGTTCTCAACTCCCTTTTTGCATGTGGTCAGCTACCGTTGGTCCC GTCTGAGGCCGAAGTGACTCTAATAAAGGTAGCCTTGACGTCTGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTCAAGGGACCTACCGGTGTGCTGGCCGGCCGGGCGGAGCGCGGCGGCGCAGAGCGGCT GCAGATCCTGTCCACCATGACCAGGCGCCCACGGAGCAGCAGAGCGTGGCATTTTGTCTT GAGTGCAGCCCGTCGAGACGCGGATGCCAGGGCCGTGGCTCTGGCAGGGACCCCCAACTG GGGCTACGACTCTGATGGGCAGCACAGCGACTCAGATTCCGACCCCGAGTGTCCGAACGC GCCGCCCTCCATCCCCAGCGCGGTGCCCGTGACCGGGGAGTCCTTCTGTGACTGTGACAG TCAGAGCGAGGCCTTCTGCGGCAGCCTGCACACCGCCCACCGGGGCAGGGACTGCCGCTG CGGGGAGGAGGATGAGGATTTCGACTGGGTCTGGGATGACCTGAACAAGTCCTCAGCCAC CCTGCTGAGCTGCGACAACCGCAAGGTCAGCTTCCACACGGAGTACAGCTGCGGCACGGC GGCCATCCGCGGCACCAAGGAGCTGGCCGAGGGCCAGCACTTCTGGGAGATCAAGATGAC CTCGCCCGTCTACGGCACAGACATGATGGTGGGCATTGGGACGTCAGACGTGGACCTGGA CAAGTACCATCACACGTTCTGCAGCCTGCTCGGCAGGGACGAGGACAGCTGGGGCCTCTC CTACACGGGGCTCCTCCACCACAAGGGCGACAAGACCAGCTTCTCCTCACGGTTCGGCCA GGGCTCCATCATCGGCGTCCACCTGGACACCTGGCACGGGACGCTGACCTTCTTCAAGAA CAGGAAGTGCATAGGAGTGGCAGCCACGCAGCTGCAGAACAAGAGGTTCTACCCGATGGT GTGCTCCACGGCGGCCAAGAGCAGCATGAAAGTGATCCGCTCCTGCGCCACCATCACCTC CTTGCAGTACCTGTGCTGCTACCGCCTGCGCCAGCTGCGGCCCGACTCCGGGGACACGCT CGAGGGCCTGCCCCTGCCACCCGGCCTCAAGCAGGTGCTGCACCACAAGCTGGGCTGGGT CCTGAGCATGAGCTGCGCCCACCACAAGCCCCCCGCACCTGCGCCCTCGCCGGCAGCTAG TCCCAGCAGCCCTGAGAGCCGGCGCTGCCAGAGGAAGCGCTGCCGAAGGACCTAGCTCGT TCCACCAAAATGGCCTTCTGGGCCCGGGTCAGTGGCGACGCTGCCCGCCCTTTGGACCAC CCTCCAGGGCCACGGGAGAGGGAGGCCTGGGCTGAGGTGGTCTCGGCTGCCCCCCTGCCC GCCCGAGGCTGGACGGGCCTTGTTCTGGAGGCTCTGGGGCCTCTGGGGCCTTGCCCTGTG ATCCTGAGACCAGGACCGCCCAGGTCTGTGTGCTGCCTGTGCCCCATGAGCGGCCACGGC CCCAGAACAGCCAGACGCAGGAAGCTGTGGTCTGCTGCCTGCAAGGATGGCCTCTTCCTG CCGTCTCTGGCCTCGGGTTCTCAACTCCCTTTTTGCATGTGGTCAGCTACCGTTGGTCCC GTCTGAGGCCGAAGTGACTCTAATAAAGGTAGCCTTGACGTCTGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 377-495, + strand, RNAz p=0.572752 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 377-495, + strand, RNAz p=0.572752 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC024244, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 200-376, gnl|bosTau2|chr25 (2846472-2846648) | |
| 200-376, gnl|canFam2|chr6 (42167089-42166879) | |
| 200-376, gnl|danRer3|chr19 (8159841-8160059) | |
| 200-376, gnl|dasNov1|scaffold_107025 (4855-5067) | |
| 200-376, gnl|echTel1|scaffold_57568 (1067-863) | |
| 200-376, gnl|fr1|chrUn (94566410-94566191) | |
| 200-376, gnl|galGal2|chr14 (1883058-1883290) | |
| 200-376, gnl|hg17|chr16 (1768410-1768628) | |
| 200-376, gnl|Hg17|chr16 (1768617-1768438) | |
| 200-376, gnl|mm7|chr17 (23073637-23073427) | |
| 200-376, gnl|Mm7|chr17 (23073436-23073615) | |
| 200-376, gnl|monDom2|scaffold_5 (121994570-121994373) | |
| 200-376, gnl|panTro1|chr18 (1852864-1853082) | |
| 200-376, gnl|rheMac2|chr20 (1764600-1764817) | |
| 200-376, gnl|rn3|chr10 (14139287-14139077) | |
| 200-376, gnl|tetNig1|chrUn_random (39412296-39412494) | |
| 200-376, gnl|xenTro1|scaffold_12 (3471483-3471255) | |
| 377-580, gnl|bosTau2|chr25 (2846723-2846927) | |
| 377-580, gnl|canFam2|chr6 (42167367-42167212) | |
| 377-580, gnl|danRer3|chr19 (8157225-8157371) | |
| 377-580, gnl|echTel1|scaffold_57568 (1344-1191) | |
| 377-580, gnl|fr1|chrUn (94566758-94566606) | |
| 377-580, gnl|galGal2|chr14 (1882146-1882294) | |
| 377-580, gnl|hg17|chr16 (1768113-1768266) | |
| 377-580, gnl|Hg17|chr16 (1768324-1768122) | |
| 377-580, gnl|mm7|chr17 (23073937-23073783) | |
| 377-580, gnl|Mm7|chr17 (23073723-23073923) | |
| 377-580, gnl|monDom2|scaffold_5 (121995626-121995473) | |
| 377-580, gnl|panTro1|chr18 (1852567-1852720) | |
| 377-580, gnl|rheMac2|chr20 (1764303-1764456) | |
| 377-580, gnl|rn3|chr10 (14139585-14139431) | |
| 377-580, gnl|tetNig1|chrUn_random (39411988-39412140) | |
| 377-580, gnl|xenTro1|scaffold_12 (3471726-3471591) | |
| 793-1298, gnl|bosTau2|chr25 (2847386-2847867) | |
| 793-1298, gnl|Hg17|chr16 (1767447-1766925) | |
| 793-1298, gnl|Mm7|chr17 (23074514-23074988) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 200-376, gnl|bosTau2|chr25 (2846472-2846648) | |
| 200-376, gnl|canFam2|chr6 (42167089-42166879) | |
| 200-376, gnl|danRer3|chr19 (8159841-8160059) | |
| 200-376, gnl|dasNov1|scaffold_107025 (4855-5067) | |
| 200-376, gnl|echTel1|scaffold_57568 (1067-863) | |
| 200-376, gnl|fr1|chrUn (94566410-94566191) | |
| 200-376, gnl|galGal2|chr14 (1883058-1883290) | |
| 200-376, gnl|hg17|chr16 (1768410-1768628) | |
| 200-376, gnl|Hg17|chr16 (1768617-1768438) | |
| 200-376, gnl|mm7|chr17 (23073637-23073427) | |
| 200-376, gnl|Mm7|chr17 (23073436-23073615) | |
| 200-376, gnl|monDom2|scaffold_5 (121994570-121994373) | |
| 200-376, gnl|panTro1|chr18 (1852864-1853082) | |
| 200-376, gnl|rheMac2|chr20 (1764600-1764817) | |
| 200-376, gnl|rn3|chr10 (14139287-14139077) | |
| 200-376, gnl|tetNig1|chrUn_random (39412296-39412494) | |
| 200-376, gnl|xenTro1|scaffold_12 (3471483-3471255) | |
| 377-580, gnl|bosTau2|chr25 (2846723-2846927) | |
| 377-580, gnl|canFam2|chr6 (42167367-42167212) | |
| 377-580, gnl|danRer3|chr19 (8157225-8157371) | |
| 377-580, gnl|echTel1|scaffold_57568 (1344-1191) | |
| 377-580, gnl|fr1|chrUn (94566758-94566606) | |
| 377-580, gnl|galGal2|chr14 (1882146-1882294) | |
| 377-580, gnl|hg17|chr16 (1768113-1768266) | |
| 377-580, gnl|Hg17|chr16 (1768324-1768122) | |
| 377-580, gnl|mm7|chr17 (23073937-23073783) | |
| 377-580, gnl|Mm7|chr17 (23073723-23073923) | |
| 377-580, gnl|monDom2|scaffold_5 (121995626-121995473) | |
| 377-580, gnl|panTro1|chr18 (1852567-1852720) | |
| 377-580, gnl|rheMac2|chr20 (1764303-1764456) | |
| 377-580, gnl|rn3|chr10 (14139585-14139431) | |
| 377-580, gnl|tetNig1|chrUn_random (39411988-39412140) | |
| 377-580, gnl|xenTro1|scaffold_12 (3471726-3471591) | |
| 793-1298, gnl|bosTau2|chr25 (2847386-2847867) | |
| 793-1298, gnl|Hg17|chr16 (1767447-1766925) | |
| 793-1298, gnl|Mm7|chr17 (23074514-23074988) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ute (0.265569) | |
| ece (0.229305) | |
| col (0.195008) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| eep (0.122564) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.265569) | |
| ece (0.229305) | |
| col (0.195008) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| eep (0.122564) |