Non-Coding RNA Search

Ss1.1-Pig1-63I20.5

Sequence:


               
               ATTATTCCAGCAGGAATGCTTGTGTTATTGTATTCTCACCGGCTCTGTTTTCACAGCGGC
CCCAGGAGCACTTGGTTTCTGGGAGGCGGGTCTCTTGTCTGCCTCCTTGCATGGGCAGGG
GGGTGAATGTTCTCCCAATTCCTTGCTTTTCCTCCATCAATACCACTGGATGGAACGGTG
CTGCGCCTCCTGTCGCTGGGGCTTCCTGCGCATCTCAGGACCCTGGCCTGGCCGTGTGGG
GCCTGAGACCCATGAAAAAGCTCGTGGCCATCCACGGAAGAGAAGGGACTGGTCACAGCC
GGAGAAGAGGGAACCGCTCCGGGGCTTTGTTTTGGAAGGGCTGCCCGGGGCTGTCACTGT
GTCTCTGGCTGTAAAGCAGCGACACGACAGTCCTCTCTGCAGGGTTAGCCTGGGCTCCTT
TCTTTTCTGAATCCTTTTCTTCTCCCTTAGTAACAGCTCCCTGCCCCCGGGGCTTCAGCC
ACCTCGGTGTCCCTCTGCTGTGTGGTGGGGAGGCCGTATGTTCAATCCAGTGGGGTGCAG
GGGCTTTGTTTCTGCCTGGAGAGAGGGCTCTGGGGATGGAAATGAGGAACAGCAGGCCTT
CAGACAATGAGGCGTTCTGCCCTCCTGCTGCCGTAATTCTCTCCTCCGAGGCCAGAGCTG
GTAGGAGATGAGTGCCGCTGGCGTGGCGCCTCGCTCTGCACTCGGGTTTGTGTCTGTGGT
TCTCCTTCTCGCCCGCCCCTCCCTCCTCCGGCTGTCCCACCCTGTCCGTGGGCGCTTTTA
CCACCGGCCTGTGCTGTGGGACTGTCATGGCATTTAGTTCAGAGGTGAGGGGCTTTGGCC
TGAAATAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTATTCCAGCAGGAATGCTTGTGTTATTGTATTCTCACCGGCTCTGTTTTCACAGCGGC
CCCAGGAGCACTTGGTTTCTGGGAGGCGGGTCTCTTGTCTGCCTCCTTGCATGGGCAGGG
GGGTGAATGTTCTCCCAATTCCTTGCTTTTCCTCCATCAATACCACTGGATGGAACGGTG
CTGCGCCTCCTGTCGCTGGGGCTTCCTGCGCATCTCAGGACCCTGGCCTGGCCGTGTGGG
GCCTGAGACCCATGAAAAAGCTCGTGGCCATCCACGGAAGAGAAGGGACTGGTCACAGCC
GGAGAAGAGGGAACCGCTCCGGGGCTTTGTTTTGGAAGGGCTGCCCGGGGCTGTCACTGT
GTCTCTGGCTGTAAAGCAGCGACACGACAGTCCTCTCTGCAGGGTTAGCCTGGGCTCCTT
TCTTTTCTGAATCCTTTTCTTCTCCCTTAGTAACAGCTCCCTGCCCCCGGGGCTTCAGCC
ACCTCGGTGTCCCTCTGCTGTGTGGTGGGGAGGCCGTATGTTCAATCCAGTGGGGTGCAG
GGGCTTTGTTTCTGCCTGGAGAGAGGGCTCTGGGGATGGAAATGAGGAACAGCAGGCCTT
CAGACAATGAGGCGTTCTGCCCTCCTGCTGCCGTAATTCTCTCCTCCGAGGCCAGAGCTG
GTAGGAGATGAGTGCCGCTGGCGTGGCGCCTCGCTCTGCACTCGGGTTTGTGTCTGTGGT
TCTCCTTCTCGCCCGCCCCTCCCTCCTCCGGCTGTCCCACCCTGTCCGTGGGCGCTTTTA
CCACCGGCCTGTGCTGTGGGACTGTCATGGCATTTAGTTCAGAGGTGAGGGGCTTTGGCC
TGAAATAAAATG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               20-167, - strand, RNAz p=0.999999
               

               
               247-402, - strand, RNAz p=0.999933
               

               
               443-666, + strand, RNAz p=0.935418

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-167, - strand, RNAz p=0.999999
               

               
               247-402, - strand, RNAz p=0.999933
               

               
               443-666, + strand, RNAz p=0.935418

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               309-386, + strand, RNAmicro p=0.999999
               

               
               297-426, - strand, RNAmicro p=0.996404

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               309-386, + strand, RNAmicro p=0.999999
               

               
               297-426, - strand, RNAmicro p=0.996404

Similar Transcript(s): 3 entry(ies)

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Similar Transcript(s): 3 entry(ies)

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               24-167, BW984021 full-length enriched swine cDNA library, adult intestine 
(dbj|BW984021.1|), blast E-value=0, identity=98.61% 
               

               
               247-402, BW984021 full-length enriched swine cDNA library, adult intestine 
(dbj|BW984021.1|), blast E-value=0, identity=99.36% 
               

               
               247-402, DB818586 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|DB818586.1|), blast E-value=0, identity=100%

Similar Transcript(s): 3 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               24-167, BW984021 full-length enriched swine cDNA library, adult intestine 
(dbj|BW984021.1|), blast E-value=0, identity=98.61% 
               

               
               247-402, BW984021 full-length enriched swine cDNA library, adult intestine 
(dbj|BW984021.1|), blast E-value=0, identity=99.36% 
               

               
               247-402, DB818586 full-length enriched swine cDNA library, adult thymus Sus 
(dbj|DB818586.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-851, gnl|bosTau2|chr19 (40993659-40994486)
               

               
               20-851, gnl|Hg17|chr17 (43554263-43555094)
               

               
               20-851, gnl|Mm7|chr11 (96877710-96876926)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-851, gnl|bosTau2|chr19 (40993659-40994486)
               

               
               20-851, gnl|Hg17|chr17 (43554263-43555094)
               

               
               20-851, gnl|Mm7|chr11 (96877710-96876926)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               col (0.195008)
               

               
               duo (0.172801)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               hlv (0.139256)
               

               
               nmm (0.132802)

	20-167, - strand, RNAz p=0.999999
	247-402, - strand, RNAz p=0.999933
	443-666, + strand, RNAz p=0.935418

	309-386, + strand, RNAmicro p=0.999999
	297-426, - strand, RNAmicro p=0.996404

	24-167, BW984021 full-length enriched swine cDNA library, adult intestine (dbj\|BW984021.1\|), blast E-value=0, identity=98.61%
	247-402, BW984021 full-length enriched swine cDNA library, adult intestine (dbj\|BW984021.1\|), blast E-value=0, identity=99.36%
	247-402, DB818586 full-length enriched swine cDNA library, adult thymus Sus (dbj\|DB818586.1\|), blast E-value=0, identity=100%

	20-851, gnl\|bosTau2\|chr19 (40993659-40994486)
	20-851, gnl\|Hg17\|chr17 (43554263-43555094)
	20-851, gnl\|Mm7\|chr11 (96877710-96876926)