Non-Coding RNA Search

Ss1.1-Pig1-63K11.5

Sequence:


               
               TGTTTATTGCAAGTGCTGGGGGGGGAGGGAGGAAAAGAGGGCTGCCGGGTTGGGGGTGCT
TTAGGTACCAGGTTCGGGGAGGGAGCCCAGCGCCAAGCGCATTTGAGGAATGGGACACGG
GTCAGACAGTGGGAAGCCCCACCCGCTCAGACCAGGCTGCGTGCGTCCTACCCTCCCCCT
CACGCATGCCTCCCCCCCAGGCCCCCGTCAGCGCAGGGAGCGTGGGGCGGTGGGGGAGGC
CGAACGGTAGCAGCGGTACCCCTCCAGGGAGGCTGGCAGGAGCAGCAGGCCGCTCAGCGG
GTCTTTCCGGCAGCGCCCCATGGCCTCCCTGTAGCTCACCCTCTCCTTGGAGATGGGGTC
TGTCAGGTCCTTGTCGTAGCTGCCCTCGTCCTGCAGGAGCTGGGCCAGCTCTTCACTGAT
CATTCCGGAGAGCACGGCCTGCGAGAGGGGGATGCGGCCTGTCCTCTTGGGGTCGATGAG
CCCGCCGGTCAGGTGCTGCACCTGCAGGTGCGGGAGCACGCTCTCCAGGGGCATCCAGCC
CTTCCGGATGGCCTCGCCCACCGACAGCCGCTTCTTGGTGACGGGGTCCTCGATGCCGGT
GAAGGCCTTCTGGGCGTTGAGCAGCCTCTGCGTTGCGCTGTTCTCGATCAGCCCCCTCTC
CACGGCCTTGTGCACGGAGTAGCGCTCTCGGCTGAGGAGGTCCACGATGCCCCCCGTGGC
CGCCTGCGCCTCCAGCAGCTTCTGCCCGGTGATGGGGTCCAGCATGTTCTTGGCCACGGC
CGTCTTGATGGTGCACTTGTTGTCTGTGGTTGTGTCGTAGACCCCGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTTATTGCAAGTGCTGGGGGGGGAGGGAGGAAAAGAGGGCTGCCGGGTTGGGGGTGCT
TTAGGTACCAGGTTCGGGGAGGGAGCCCAGCGCCAAGCGCATTTGAGGAATGGGACACGG
GTCAGACAGTGGGAAGCCCCACCCGCTCAGACCAGGCTGCGTGCGTCCTACCCTCCCCCT
CACGCATGCCTCCCCCCCAGGCCCCCGTCAGCGCAGGGAGCGTGGGGCGGTGGGGGAGGC
CGAACGGTAGCAGCGGTACCCCTCCAGGGAGGCTGGCAGGAGCAGCAGGCCGCTCAGCGG
GTCTTTCCGGCAGCGCCCCATGGCCTCCCTGTAGCTCACCCTCTCCTTGGAGATGGGGTC
TGTCAGGTCCTTGTCGTAGCTGCCCTCGTCCTGCAGGAGCTGGGCCAGCTCTTCACTGAT
CATTCCGGAGAGCACGGCCTGCGAGAGGGGGATGCGGCCTGTCCTCTTGGGGTCGATGAG
CCCGCCGGTCAGGTGCTGCACCTGCAGGTGCGGGAGCACGCTCTCCAGGGGCATCCAGCC
CTTCCGGATGGCCTCGCCCACCGACAGCCGCTTCTTGGTGACGGGGTCCTCGATGCCGGT
GAAGGCCTTCTGGGCGTTGAGCAGCCTCTGCGTTGCGCTGTTCTCGATCAGCCCCCTCTC
CACGGCCTTGTGCACGGAGTAGCGCTCTCGGCTGAGGAGGTCCACGATGCCCCCCGTGGC
CGCCTGCGCCTCCAGCAGCTTCTGCCCGGTGATGGGGTCCAGCATGTTCTTGGCCACGGC
CGTCTTGATGGTGCACTTGTTGTCTGTGGTTGTGTCGTAGACCCCGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|19263888|gb|AAH25156.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|19263888|gb|AAH25156.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               440-559, - strand, RNAz p=0.647504

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-559, - strand, RNAz p=0.647504

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-828, gnl|bosTau2|chr19 (49572082-49571223)
               

               
               2-828, gnl|Hg17|chr17 (71514540-71515399)
               

               
               2-828, gnl|Mm7|chr11 (116329617-116330423)
               


               
               253-790, gnl|bosTau2|chr14 (360969-361505)
               

               
               253-790, gnl|Hg17|chr8 (145014137-145014652)
               

               
               253-790, gnl|Mm7|chr15 (76186395-76186931)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-828, gnl|bosTau2|chr19 (49572082-49571223)
               

               
               2-828, gnl|Hg17|chr17 (71514540-71515399)
               

               
               2-828, gnl|Mm7|chr11 (116329617-116330423)
               


               
               253-790, gnl|bosTau2|chr14 (360969-361505)
               

               
               253-790, gnl|Hg17|chr8 (145014137-145014652)
               

               
               253-790, gnl|Mm7|chr15 (76186395-76186931)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eep (0.245128)
               

               
               ton (0.1755)
               

               
               ute (0.132784)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.245128)
               

               
               ton (0.1755)
               

               
               ute (0.132784)

	2-828, gnl\|bosTau2\|chr19 (49572082-49571223)
	2-828, gnl\|Hg17\|chr17 (71514540-71515399)
	2-828, gnl\|Mm7\|chr11 (116329617-116330423)

	253-790, gnl\|bosTau2\|chr14 (360969-361505)
	253-790, gnl\|Hg17\|chr8 (145014137-145014652)
	253-790, gnl\|Mm7\|chr15 (76186395-76186931)