Non-Coding RNA Search

Ss1.1-Pig1-63L15.5

Sequence:


               
               CTTAGAGAGTCAAACCACTAGGAGAGAGAGCAGATGCCCGGCTACCCAGATGCGGGGTTT
TACTGCTGGCCCCCTCTGCATTGAGTACTTCTTTTTGGAGTGATATCAGTGACTTTTAAG
TTATTTTTATTTAACTAATATATAATTATTATTTTCTCCATCCCTGCAGTCTCCCAGGCT
GTGGCTTCTCTCCTTGTCAGAGCCTGGTCTGGAGGGACCCCTTTCCCCTTCCCCTCCAGG
CTCCTTCCTAACCCATTTGCCTGATCTGCTTTGTTGTTTGAAACCACTAAATCAAGAGAG
ACATTGCTGTTCATTGTTTTTTAAAGAAGTAAAGCAGGCTTTTTCTGGCCACTACCCTCA
TGGTTTCTGAAAGCCAGGTCCCATGGTCCAGGTCAGCTGCCCACAGCAAGGCTGGCTTGG
GAAGTGGATGGGTCCTGTTCTGTACTCAGTGGGCACATGGCTCCACACTTCAGACTGTTC
AATGCAGATTCTGGGGCTGGGGGTGTCANAAGGTGGCCTATTTTCCCCCAGAGGTGGGCA
TGGGCAGAGGGGCAGGGGCAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAGAGAGTCAAACCACTAGGAGAGAGAGCAGATGCCCGGCTACCCAGATGCGGGGTTT
TACTGCTGGCCCCCTCTGCATTGAGTACTTCTTTTTGGAGTGATATCAGTGACTTTTAAG
TTATTTTTATTTAACTAATATATAATTATTATTTTCTCCATCCCTGCAGTCTCCCAGGCT
GTGGCTTCTCTCCTTGTCAGAGCCTGGTCTGGAGGGACCCCTTTCCCCTTCCCCTCCAGG
CTCCTTCCTAACCCATTTGCCTGATCTGCTTTGTTGTTTGAAACCACTAAATCAAGAGAG
ACATTGCTGTTCATTGTTTTTTAAAGAAGTAAAGCAGGCTTTTTCTGGCCACTACCCTCA
TGGTTTCTGAAAGCCAGGTCCCATGGTCCAGGTCAGCTGCCCACAGCAAGGCTGGCTTGG
GAAGTGGATGGGTCCTGTTCTGTACTCAGTGGGCACATGGCTCCACACTTCAGACTGTTC
AATGCAGATTCTGGGGCTGGGGGTGTCANAAGGTGGCCTATTTTCCCCCAGAGGTGGGCA
TGGGCAGAGGGGCAGGGGCAGCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               92-243, - strand, RNAz p=0.960485

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               92-243, - strand, RNAz p=0.960485

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-563, gnl|bosTau2|chr7 (1515371-1514809)
               

               
               1-563, gnl|Hg17|chr1 (224415054-224414494)
               

               
               1-563, gnl|Mm7|chr11 (59413480-59413980)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-563, gnl|bosTau2|chr7 (1515371-1514809)
               

               
               1-563, gnl|Hg17|chr1 (224415054-224414494)
               

               
               1-563, gnl|Mm7|chr11 (59413480-59413980)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cbr (0.127975)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.127975)

	1-563, gnl\|bosTau2\|chr7 (1515371-1514809)
	1-563, gnl\|Hg17\|chr1 (224415054-224414494)
	1-563, gnl\|Mm7\|chr11 (59413480-59413980)