Non-Coding RNA Search

Ss1.1-Pig1-63N17.5

Sequence:


               
               TCTCTGTGCCTTGGCCTCTGTCCCCACAGCAGGCCCCCGTCAGTATCCTCCTCTTGCCCG
AGGCCAGTGGGGCCCTTTGTGTCTGGAGCCGGCCAGGTCGGCCCAGAGCGGCCCTCTGCC
TCTGCCTCCCCCTCCCGGCTCTGCTCTTCCTCCACCTCTGAGCCTTGCCTGTGAAGTTCC
TTCAGCCTCACTCTCTGGGCCTGTGGCACTGCCTGTCGGTATCTTTCCATCTCTGCCAGC
CTCCAGGCTGGCTCTGTCCCTCTCTGTCTCTCAGCCTTTATCTCTGGGTTTCGCTGTCTT
TCCCCCACCTCCCCCCCACAGGCCTGGGCATCCCCCATCCTGGCTGCTGTGGCCAACATA
ACTGTGACAGCTGAGTGATCCAGCCTGGCCGTGGGCAGCGGGAAGACCCTGGGGGTGGCC
ACCAGCTCTCACCTCTCCCTGGAGACCCAGGTTTGGGAGAGGTGGGCGGGGCTGACACGG
GTCATGGGCGGGCCAGGCTGGGCATGGAGGGAGGGAGACTCCCTCCCAGCCTCACTAGCC
CCCCTCTGCCCAGCCACAATTTTCCCTTCCTTCACTTCCTCCACCTCCCTCTCCTCTCCT
GTTTACACTCCCCAAATACGCACAGGCTGTTATCATGGGTCCTGAGTCATCCACACAGCC
TGCCCCGGCCTCCCTGCCCCCAGCGCCGCAGAGCCGCCCCAGAGCCCCCTGCCGCCCCAG
GCTAATAGGAGCCAGATGGCCGCCTGGTGACTCAGCCACTGGCCTGTGGGAACCCAGGCA
ACCTGCCTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTGTGCCTTGGCCTCTGTCCCCACAGCAGGCCCCCGTCAGTATCCTCCTCTTGCCCG
AGGCCAGTGGGGCCCTTTGTGTCTGGAGCCGGCCAGGTCGGCCCAGAGCGGCCCTCTGCC
TCTGCCTCCCCCTCCCGGCTCTGCTCTTCCTCCACCTCTGAGCCTTGCCTGTGAAGTTCC
TTCAGCCTCACTCTCTGGGCCTGTGGCACTGCCTGTCGGTATCTTTCCATCTCTGCCAGC
CTCCAGGCTGGCTCTGTCCCTCTCTGTCTCTCAGCCTTTATCTCTGGGTTTCGCTGTCTT
TCCCCCACCTCCCCCCCACAGGCCTGGGCATCCCCCATCCTGGCTGCTGTGGCCAACATA
ACTGTGACAGCTGAGTGATCCAGCCTGGCCGTGGGCAGCGGGAAGACCCTGGGGGTGGCC
ACCAGCTCTCACCTCTCCCTGGAGACCCAGGTTTGGGAGAGGTGGGCGGGGCTGACACGG
GTCATGGGCGGGCCAGGCTGGGCATGGAGGGAGGGAGACTCCCTCCCAGCCTCACTAGCC
CCCCTCTGCCCAGCCACAATTTTCCCTTCCTTCACTTCCTCCACCTCCCTCTCCTCTCCT
GTTTACACTCCCCAAATACGCACAGGCTGTTATCATGGGTCCTGAGTCATCCACACAGCC
TGCCCCGGCCTCCCTGCCCCCAGCGCCGCAGAGCCGCCCCAGAGCCCCCTGCCGCCCCAG
GCTAATAGGAGCCAGATGGCCGCCTGGTGACTCAGCCACTGGCCTGTGGGAACCCAGGCA
ACCTGCCTTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               305-595, - strand, RNAz p=0.999927

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-595, - strand, RNAz p=0.999927

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               530-682, - strand, RNAmicro p=0.937105

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               530-682, - strand, RNAmicro p=0.937105

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-792, gnl|bosTau2|chr18 (45801475-45802264)
               

               
               3-792, gnl|Hg17|chr19 (46520801-46521627)
               

               
               3-792, gnl|Mm7|chr7 (22486629-22485865)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-792, gnl|bosTau2|chr18 (45801475-45802264)
               

               
               3-792, gnl|Hg17|chr19 (46520801-46521627)
               

               
               3-792, gnl|Mm7|chr7 (22486629-22485865)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               eep (0.122564)

	3-792, gnl\|bosTau2\|chr18 (45801475-45802264)
	3-792, gnl\|Hg17\|chr19 (46520801-46521627)
	3-792, gnl\|Mm7\|chr7 (22486629-22485865)