Non-Coding RNA Search

Ss1.1-Pig1-64A11.5

Sequence:


               
               CCCCTCAAGTCCCACCAGGTCAGCCAGGACCACTGACTTCACCTGGAAATTTACTAAAGG
CACTAGAGAAAAACTACATGAGCTCCCTGGGAGAAATCCCAGCCGGAGAAGCCAGTTTGA
ATTATGTGTCCCAGTTGGCTTCACCCATGTCTGGAGACAAGGACAATCTGCCAACAAATC
CACCAGAGCCAGCACTCTGTTCAGAGTATAAAATGCAAATGGCTATACCCCTGGGTCTTG
CCTCCCCTCCTCCAAGTGAGAAGAGCAGGCTCTCCTCCCCTACGTTTTTAGATCAAGGTG
AGCACCACCGCTAATCAGTATACTCACTTCATATCCTTATGCTACACAGACACTAGGAGA
AGCATAGCCAGCACCCTTCTATCACCAGATACCTCAGAGCTTAATCCCAGTGAGCTATCT
CCATTAGCAGGTCTGATTTATATAATCTTGCTACATTTTGAAGGTCAGAAGCTATGCAGC
TTAACATTTGTGGTTGGAGCAGGCTTGCTGTAGAAATGGCAGGATCATGGGAATAGGCTA
CCTTGCTGGTGTGGGTTCCAGGTTCCTCTTTATAACAGCAGACCTGGCACTTGACCTAGG
GATAGACTCTGTCCACTCAGCACTGGACAGGGTGGCTATGGTCCTCAAAGTTCAGTTTTT
AGGGAGACGGTATTTCCATTCATTTTACCCCACATTTAACATCTCAGGGGTAAAGAAACT
AGATTTAAGGCTTCAATAGAGGCCACAGAAGATTCATTCCTATGGCGTCAATTGTCAATG
TTAATTTATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTCAAGTCCCACCAGGTCAGCCAGGACCACTGACTTCACCTGGAAATTTACTAAAGG
CACTAGAGAAAAACTACATGAGCTCCCTGGGAGAAATCCCAGCCGGAGAAGCCAGTTTGA
ATTATGTGTCCCAGTTGGCTTCACCCATGTCTGGAGACAAGGACAATCTGCCAACAAATC
CACCAGAGCCAGCACTCTGTTCAGAGTATAAAATGCAAATGGCTATACCCCTGGGTCTTG
CCTCCCCTCCTCCAAGTGAGAAGAGCAGGCTCTCCTCCCCTACGTTTTTAGATCAAGGTG
AGCACCACCGCTAATCAGTATACTCACTTCATATCCTTATGCTACACAGACACTAGGAGA
AGCATAGCCAGCACCCTTCTATCACCAGATACCTCAGAGCTTAATCCCAGTGAGCTATCT
CCATTAGCAGGTCTGATTTATATAATCTTGCTACATTTTGAAGGTCAGAAGCTATGCAGC
TTAACATTTGTGGTTGGAGCAGGCTTGCTGTAGAAATGGCAGGATCATGGGAATAGGCTA
CCTTGCTGGTGTGGGTTCCAGGTTCCTCTTTATAACAGCAGACCTGGCACTTGACCTAGG
GATAGACTCTGTCCACTCAGCACTGGACAGGGTGGCTATGGTCCTCAAAGTTCAGTTTTT
AGGGAGACGGTATTTCCATTCATTTTACCCCACATTTAACATCTCAGGGGTAAAGAAACT
AGATTTAAGGCTTCAATAGAGGCCACAGAAGATTCATTCCTATGGCGTCAATTGTCAATG
TTAATTTATTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-199, - strand, RNAz p=0.933318

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, - strand, RNAz p=0.933318

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-458, gnl|bosTau2|chr20 (20962917-20963374)
               

               
               1-458, gnl|Hg17|chr5 (38968993-38969423)
               

               
               1-458, gnl|Mm7|chr15 (6642425-6642030)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-458, gnl|bosTau2|chr20 (20962917-20963374)
               

               
               1-458, gnl|Hg17|chr5 (38968993-38969423)
               

               
               1-458, gnl|Mm7|chr15 (6642425-6642030)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.20816)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               cov (0.132153)

	1-458, gnl\|bosTau2\|chr20 (20962917-20963374)
	1-458, gnl\|Hg17\|chr5 (38968993-38969423)
	1-458, gnl\|Mm7\|chr15 (6642425-6642030)