Non-Coding RNA Search

Ss1.1-Pig1-64N22.5

Sequence:


               
               GAAATTCTGGTGACCCAGGCTCAGTCTTCCCAAAATGCATCCGCACTTTTGGGAATGTGG
GTGATGCCACCACTGATCCATGGTCTGAGTCTGAACATCAAGAAATACCTCCTAGTATCT
GTGCCTTTGTGGATAAAACACGTCTCTGATGAACAGCTTGTGGGTTTTGTTGAAAGCTTA
CTAGTGGCAGTTTTTAATACAGCATCCCCACTTTCCAATCCTGAGTTATGCCCAAGTGCC
TTACAGGGTCTAAACCAGGCCATGAAACTGCCCAGCCCTGCTCACCACCTCTGGAGTCTG
CTCAGTGAAGCTACTGGGAAAATTTTTGACCTTCTGCCAAATAAGATTCGGAGAAATGAT
CTAGAGCTGTATATCAGTGTAGCAAAATGCCTTTCCGAAATGACAGATGATGAAGCCAAT
CGAGTTGCCCAGATTACCAAGAGTAGCGTATAAAAAGCTGCCTTTGTCAGACTGTACTTG
GTCTCTCAAGGACGATTCCCCTTGATGGGCTTGACTGATGAGCTCACCGTTGCTGTCCAG
CACCATGAGAAAGACACACTGGGCTGGATGATACTGCACAGCTTATATCACGCCCGCATT
GTGAGCCACGCCAACACCGGGGTTTTGAAGAGAATGGAGTGGCTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATTCTGGTGACCCAGGCTCAGTCTTCCCAAAATGCATCCGCACTTTTGGGAATGTGG
GTGATGCCACCACTGATCCATGGTCTGAGTCTGAACATCAAGAAATACCTCCTAGTATCT
GTGCCTTTGTGGATAAAACACGTCTCTGATGAACAGCTTGTGGGTTTTGTTGAAAGCTTA
CTAGTGGCAGTTTTTAATACAGCATCCCCACTTTCCAATCCTGAGTTATGCCCAAGTGCC
TTACAGGGTCTAAACCAGGCCATGAAACTGCCCAGCCCTGCTCACCACCTCTGGAGTCTG
CTCAGTGAAGCTACTGGGAAAATTTTTGACCTTCTGCCAAATAAGATTCGGAGAAATGAT
CTAGAGCTGTATATCAGTGTAGCAAAATGCCTTTCCGAAATGACAGATGATGAAGCCAAT
CGAGTTGCCCAGATTACCAAGAGTAGCGTATAAAAAGCTGCCTTTGTCAGACTGTACTTG
GTCTCTCAAGGACGATTCCCCTTGATGGGCTTGACTGATGAGCTCACCGTTGCTGTCCAG
CACCATGAGAAAGACACACTGGGCTGGATGATACTGCACAGCTTATATCACGCCCGCATT
GTGAGCCACGCCAACACCGGGGTTTTGAAGAGAATGGAGTGGCTCTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7020435|dbj|BAA91129.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7020435|dbj|BAA91129.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               170-289, - strand, RNAz p=0.759498

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               170-289, - strand, RNAz p=0.759498

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               91-351, gnl|bosTau2|chr23 (16036105-16036365)
               

               
               91-351, gnl|Hg17|chr9 (20971425-20971685)
               

               
               91-351, gnl|Mm7|chr4 (87800701-87800961)
               


               
               440-620, gnl|bosTau2|chr23 (16040424-16040604)
               

               
               440-620, gnl|canFam2|chr11 (43590021-43590218)
               

               
               440-620, gnl|echTel1|scaffold_320664 (4029-3832)
               

               
               440-620, gnl|galGal2|chrZ (13031275-13031073)
               

               
               440-620, gnl|hg17|chr9 (20976267-20976469)
               

               
               440-620, gnl|Hg17|chr9 (20976285-20976465)
               

               
               440-620, gnl|loxAfr1|scaffold_8390 (32899-33096)
               

               
               440-620, gnl|mm7|chr4 (87804725-87804925)
               

               
               440-620, gnl|Mm7|chr4 (87804741-87804921)
               

               
               440-620, gnl|monDom2|scaffold_19 (16418460-16418655)
               

               
               440-620, gnl|oryCun1|scaffold_113785 (12033-12229)
               

               
               440-620, gnl|panTro1|chr11 (21246243-21246445)
               

               
               440-620, gnl|rheMac2|chr15 (56008216-56008020)
               

               
               440-620, gnl|rn3|chr5 (107701370-107701570)
               

               
               440-620, gnl|xenTro1|scaffold_884 (38748-38547)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               91-351, gnl|bosTau2|chr23 (16036105-16036365)
               

               
               91-351, gnl|Hg17|chr9 (20971425-20971685)
               

               
               91-351, gnl|Mm7|chr4 (87800701-87800961)
               


               
               440-620, gnl|bosTau2|chr23 (16040424-16040604)
               

               
               440-620, gnl|canFam2|chr11 (43590021-43590218)
               

               
               440-620, gnl|echTel1|scaffold_320664 (4029-3832)
               

               
               440-620, gnl|galGal2|chrZ (13031275-13031073)
               

               
               440-620, gnl|hg17|chr9 (20976267-20976469)
               

               
               440-620, gnl|Hg17|chr9 (20976285-20976465)
               

               
               440-620, gnl|loxAfr1|scaffold_8390 (32899-33096)
               

               
               440-620, gnl|mm7|chr4 (87804725-87804925)
               

               
               440-620, gnl|Mm7|chr4 (87804741-87804921)
               

               
               440-620, gnl|monDom2|scaffold_19 (16418460-16418655)
               

               
               440-620, gnl|oryCun1|scaffold_113785 (12033-12229)
               

               
               440-620, gnl|panTro1|chr11 (21246243-21246445)
               

               
               440-620, gnl|rheMac2|chr15 (56008216-56008020)
               

               
               440-620, gnl|rn3|chr5 (107701370-107701570)
               

               
               440-620, gnl|xenTro1|scaffold_884 (38748-38547)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ldo (0.0970026)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.0970026)

	91-351, gnl\|bosTau2\|chr23 (16036105-16036365)
	91-351, gnl\|Hg17\|chr9 (20971425-20971685)
	91-351, gnl\|Mm7\|chr4 (87800701-87800961)

	440-620, gnl\|bosTau2\|chr23 (16040424-16040604)
	440-620, gnl\|canFam2\|chr11 (43590021-43590218)
	440-620, gnl\|echTel1\|scaffold_320664 (4029-3832)
	440-620, gnl\|galGal2\|chrZ (13031275-13031073)
	440-620, gnl\|hg17\|chr9 (20976267-20976469)
	440-620, gnl\|Hg17\|chr9 (20976285-20976465)
	440-620, gnl\|loxAfr1\|scaffold_8390 (32899-33096)
	440-620, gnl\|mm7\|chr4 (87804725-87804925)
	440-620, gnl\|Mm7\|chr4 (87804741-87804921)
	440-620, gnl\|monDom2\|scaffold_19 (16418460-16418655)
	440-620, gnl\|oryCun1\|scaffold_113785 (12033-12229)
	440-620, gnl\|panTro1\|chr11 (21246243-21246445)
	440-620, gnl\|rheMac2\|chr15 (56008216-56008020)
	440-620, gnl\|rn3\|chr5 (107701370-107701570)
	440-620, gnl\|xenTro1\|scaffold_884 (38748-38547)