Ss1.1-Pig1-65F14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGTATCTGGGTTGAAAGAATCCGGGAACATCCAGCTATTTATGATAGCATGTGCTTCA TCATGTCAAGTTCAACAAACGTTGACTTGCTGGTGAAGGTGGGGGAGGTTGTGGACAAGC TCTTTGATTTGGATGAGAAGCTAATGTTGGAATGGATTCGCAATGGGGCTCTTCAGCCTC TGGACCAACCCCAGGAAGATTCTGAAGAGCAACCCGTGTTCAGAATTGTGCCCTGTGTAC TTGAAGCTGCCAAACAAGTACGTTCTGAAAACCCAGAAGGGCTCGATGTTTACATGCATA TCTTACAACTGCTTACCACAGTGGATGATGGAATTCAAGCAATTGTACAGAGTCCTGATA CTGGGAAGGACACTTGGAATTTACTTTTTGACCTGGTCTGCCATGAATTTTGCCAGTCTG ACGACCCACCCATCATACTTCAAGAACAGAAAACAGTGCTAGCCTCTGTTTTTTCAGTGT TGTCTGCCATCTATGCTTCACAGGCTGAACAGGAGTATCTAAAAATAGAAAAAGTAGATC TTCCTCTCATTGACAGCCTGATTCGTGTCTTGCAAAATATGGAACATTGTCAGAAGAAAC CAGAGAACTCAGCAGAATCTAACACAGAAGAAACGAAAAAGTCTGATTTAACCCAAGATG ATTTCCACTTGAAAATCTTGAAGGATATTTCATGTGAATTTCTCTCTAATATTTTCCAAG TATTAACAAAGGAGACTGTAGCTCAGGGACTGAAGGAGGGTCAGTTAAGCAAACAGAAGT GTTCCTGTGCCTTTGAAAACCTTCTTCCTTTCTATAGCCCTGTGGTGGAAGACTTTCTCA AAATCCTACATGAAGTTGATAAGACCCTTGCTGGTAATCTGGAGGAAAGCTTTCCAAGTT TGAAGGTTCAGACTTAAAAACTCTTGGAATCCTTCTACCCAAGAAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGTATCTGGGTTGAAAGAATCCGGGAACATCCAGCTATTTATGATAGCATGTGCTTCA TCATGTCAAGTTCAACAAACGTTGACTTGCTGGTGAAGGTGGGGGAGGTTGTGGACAAGC TCTTTGATTTGGATGAGAAGCTAATGTTGGAATGGATTCGCAATGGGGCTCTTCAGCCTC TGGACCAACCCCAGGAAGATTCTGAAGAGCAACCCGTGTTCAGAATTGTGCCCTGTGTAC TTGAAGCTGCCAAACAAGTACGTTCTGAAAACCCAGAAGGGCTCGATGTTTACATGCATA TCTTACAACTGCTTACCACAGTGGATGATGGAATTCAAGCAATTGTACAGAGTCCTGATA CTGGGAAGGACACTTGGAATTTACTTTTTGACCTGGTCTGCCATGAATTTTGCCAGTCTG ACGACCCACCCATCATACTTCAAGAACAGAAAACAGTGCTAGCCTCTGTTTTTTCAGTGT TGTCTGCCATCTATGCTTCACAGGCTGAACAGGAGTATCTAAAAATAGAAAAAGTAGATC TTCCTCTCATTGACAGCCTGATTCGTGTCTTGCAAAATATGGAACATTGTCAGAAGAAAC CAGAGAACTCAGCAGAATCTAACACAGAAGAAACGAAAAAGTCTGATTTAACCCAAGATG ATTTCCACTTGAAAATCTTGAAGGATATTTCATGTGAATTTCTCTCTAATATTTTCCAAG TATTAACAAAGGAGACTGTAGCTCAGGGACTGAAGGAGGGTCAGTTAAGCAAACAGAAGT GTTCCTGTGCCTTTGAAAACCTTCTTCCTTTCTATAGCCCTGTGGTGGAAGACTTTCTCA AAATCCTACATGAAGTTGATAAGACCCTTGCTGGTAATCTGGAGGAAAGCTTTCCAAGTT TGAAGGTTCAGACTTAAAAACTCTTGGAATCCTTCTACCCAAGAAATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 135-251, - strand, RNAz p=0.522999 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 135-251, - strand, RNAz p=0.522999 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 81-262, gnl|bosTau2|chr15 (19241402-19241583) | |
| 81-262, gnl|canFam2|chr21 (43803265-43803471) | |
| 81-262, gnl|dasNov1|scaffold_135218 (437-230) | |
| 81-262, gnl|echTel1|scaffold_282349 (2924-3130) | |
| 81-262, gnl|galGal2|chr5 (10043858-10044070) | |
| 81-262, gnl|hg17|chr11 (18067434-18067641) | |
| 81-262, gnl|Hg17|chr11 (18067634-18067453) | |
| 81-262, gnl|loxAfr1|scaffold_11673 (62529-62736) | |
| 81-262, gnl|mm7|chr7 (42877968-42878170) | |
| 81-262, gnl|Mm7|chr7 (42878163-42877982) | |
| 81-262, gnl|monDom2|scaffold_10 (53687313-53687121) | |
| 81-262, gnl|oryCun1|scaffold_142194 (8226-8019) | |
| 81-262, gnl|panTro1|chr9 (18311313-18311520) | |
| 81-262, gnl|rheMac2|chr14 (53839978-53839771) | |
| 81-262, gnl|rn3|chr1 (97317127-97317332) | |
| 81-262, gnl|tetNig1|chr13 (12382372-12382546) | |
| 264-381, gnl|bosTau2|chr15 (19244207-19244322) | |
| 264-381, gnl|canFam2|chr21 (43801830-43802133) | |
| 264-381, gnl|echTel1|scaffold_282349 (93-393) | |
| 264-381, gnl|fr1|chrUn (193892604-193892905) | |
| 264-381, gnl|galGal2|chr5 (10043451-10043797) | |
| 264-381, gnl|hg17|chr11 (18065075-18065377) | |
| 264-381, gnl|Hg17|chr11 (18065347-18065232) | |
| 264-381, gnl|mm7|chr7 (42875651-42875947) | |
| 264-381, gnl|Mm7|chr7 (42875918-42875803) | |
| 264-381, gnl|monDom2|scaffold_10 (53689035-53688726) | |
| 264-381, gnl|panTro1|chr9 (18308955-18309257) | |
| 264-381, gnl|rheMac2|chr14 (53842355-53842054) | |
| 264-381, gnl|rn3|chr1 (97314390-97314693) | |
| 264-381, gnl|tetNig1|chr13 (12381952-12382240) | |
| 533-732, gnl|bosTau2|chr15 (19249546-19249745) | |
| 533-732, gnl|canFam2|chr21 (43796676-43796928) | |
| 533-732, gnl|dasNov1|scaffold_19983 (9648-9900) | |
| 533-732, gnl|echTel1|scaffold_250547 (2691-2459) | |
| 533-732, gnl|galGal2|chr5 (10042239-10042471) | |
| 533-732, gnl|hg17|chr11 (18061639-18061891) | |
| 533-732, gnl|Hg17|chr11 (18061856-18061657) | |
| 533-732, gnl|loxAfr1|scaffold_11673 (52571-52821) | |
| 533-732, gnl|mm7|chr7 (42868962-42869209) | |
| 533-732, gnl|Mm7|chr7 (42869178-42868979) | |
| 533-732, gnl|monDom2|scaffold_10 (53693218-53692970) | |
| 533-732, gnl|oryCun1|scaffold_142194 (12301-12051) | |
| 533-732, gnl|panTro1|chr9 (18305422-18305674) | |
| 533-732, gnl|rheMac2|chr14 (53845794-53845543) | |
| 533-732, gnl|rn3|chr1 (97310730-97310978) | |
| 805-947, gnl|bosTau2|chr15 (19253301-19253442) | |
| 805-947, gnl|canFam2|chr21 (43793621-43793802) | |
| 805-947, gnl|dasNov1|scaffold_19983 (8338-8516) | |
| 805-947, gnl|echTel1|scaffold_2722 (4871-4689) | |
| 805-947, gnl|galGal2|chr5 (10040676-10040841) | |
| 805-947, gnl|hg17|chr11 (18058449-18058633) | |
| 805-947, gnl|Hg17|chr11 (18058630-18058489) | |
| 805-947, gnl|loxAfr1|scaffold_31395 (37896-38077) | |
| 805-947, gnl|mm7|chr7 (42865494-42865672) | |
| 805-947, gnl|Mm7|chr7 (42865675-42865531) | |
| 805-947, gnl|monDom2|scaffold_10 (53698002-53697814) | |
| 805-947, gnl|panTro1|chr9 (18302239-18302423) | |
| 805-947, gnl|rheMac2|chr14 (53849068-53848885) | |
| 805-947, gnl|rn3|chr1 (97307977-97308155) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-262, gnl|bosTau2|chr15 (19241402-19241583) | |
| 81-262, gnl|canFam2|chr21 (43803265-43803471) | |
| 81-262, gnl|dasNov1|scaffold_135218 (437-230) | |
| 81-262, gnl|echTel1|scaffold_282349 (2924-3130) | |
| 81-262, gnl|galGal2|chr5 (10043858-10044070) | |
| 81-262, gnl|hg17|chr11 (18067434-18067641) | |
| 81-262, gnl|Hg17|chr11 (18067634-18067453) | |
| 81-262, gnl|loxAfr1|scaffold_11673 (62529-62736) | |
| 81-262, gnl|mm7|chr7 (42877968-42878170) | |
| 81-262, gnl|Mm7|chr7 (42878163-42877982) | |
| 81-262, gnl|monDom2|scaffold_10 (53687313-53687121) | |
| 81-262, gnl|oryCun1|scaffold_142194 (8226-8019) | |
| 81-262, gnl|panTro1|chr9 (18311313-18311520) | |
| 81-262, gnl|rheMac2|chr14 (53839978-53839771) | |
| 81-262, gnl|rn3|chr1 (97317127-97317332) | |
| 81-262, gnl|tetNig1|chr13 (12382372-12382546) | |
| 264-381, gnl|bosTau2|chr15 (19244207-19244322) | |
| 264-381, gnl|canFam2|chr21 (43801830-43802133) | |
| 264-381, gnl|echTel1|scaffold_282349 (93-393) | |
| 264-381, gnl|fr1|chrUn (193892604-193892905) | |
| 264-381, gnl|galGal2|chr5 (10043451-10043797) | |
| 264-381, gnl|hg17|chr11 (18065075-18065377) | |
| 264-381, gnl|Hg17|chr11 (18065347-18065232) | |
| 264-381, gnl|mm7|chr7 (42875651-42875947) | |
| 264-381, gnl|Mm7|chr7 (42875918-42875803) | |
| 264-381, gnl|monDom2|scaffold_10 (53689035-53688726) | |
| 264-381, gnl|panTro1|chr9 (18308955-18309257) | |
| 264-381, gnl|rheMac2|chr14 (53842355-53842054) | |
| 264-381, gnl|rn3|chr1 (97314390-97314693) | |
| 264-381, gnl|tetNig1|chr13 (12381952-12382240) | |
| 533-732, gnl|bosTau2|chr15 (19249546-19249745) | |
| 533-732, gnl|canFam2|chr21 (43796676-43796928) | |
| 533-732, gnl|dasNov1|scaffold_19983 (9648-9900) | |
| 533-732, gnl|echTel1|scaffold_250547 (2691-2459) | |
| 533-732, gnl|galGal2|chr5 (10042239-10042471) | |
| 533-732, gnl|hg17|chr11 (18061639-18061891) | |
| 533-732, gnl|Hg17|chr11 (18061856-18061657) | |
| 533-732, gnl|loxAfr1|scaffold_11673 (52571-52821) | |
| 533-732, gnl|mm7|chr7 (42868962-42869209) | |
| 533-732, gnl|Mm7|chr7 (42869178-42868979) | |
| 533-732, gnl|monDom2|scaffold_10 (53693218-53692970) | |
| 533-732, gnl|oryCun1|scaffold_142194 (12301-12051) | |
| 533-732, gnl|panTro1|chr9 (18305422-18305674) | |
| 533-732, gnl|rheMac2|chr14 (53845794-53845543) | |
| 533-732, gnl|rn3|chr1 (97310730-97310978) | |
| 805-947, gnl|bosTau2|chr15 (19253301-19253442) | |
| 805-947, gnl|canFam2|chr21 (43793621-43793802) | |
| 805-947, gnl|dasNov1|scaffold_19983 (8338-8516) | |
| 805-947, gnl|echTel1|scaffold_2722 (4871-4689) | |
| 805-947, gnl|galGal2|chr5 (10040676-10040841) | |
| 805-947, gnl|hg17|chr11 (18058449-18058633) | |
| 805-947, gnl|Hg17|chr11 (18058630-18058489) | |
| 805-947, gnl|loxAfr1|scaffold_31395 (37896-38077) | |
| 805-947, gnl|mm7|chr7 (42865494-42865672) | |
| 805-947, gnl|Mm7|chr7 (42865675-42865531) | |
| 805-947, gnl|monDom2|scaffold_10 (53698002-53697814) | |
| 805-947, gnl|panTro1|chr9 (18302239-18302423) | |
| 805-947, gnl|rheMac2|chr14 (53849068-53848885) | |
| 805-947, gnl|rn3|chr1 (97307977-97308155) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| nlu (0.191681) | |
| thg (0.126791) |