Non-Coding RNA Search

Ss1.1-Pig1-65F23.5

Sequence:


               
               CCGCCCCCCGTCCCAATTTTAGTTTTCATGCAATAAAAAGGCTGAACTTTTTATTCCGTA
AAACATGAAGGACAAAACTCAAAAATGTATTTCAGGTCAATCACCAGAAAAATCCCTCCC
CCTTGCCTTTTCCCAAAAGGACCGTTAATGTACATGACACTTTTTTGTTGTTTTTGTTTG
GGGTTTTACCGTTGTTGGGATTTTTTTTATTTTCGGGGGGTTTTTTTGGGGGAAAAAATT
TTTTTAAATGGAAGCTTCGAGCAAGCCTCCCCCCACCCCATCCCAATCAACCTCTTTGCT
TTCTTCTTAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAGGACAAAAAAAAATCCAAGC
CCTTTTGTCTGTCTGTACCCAAGCCCTTCCACCAGGAAAGCTAGTCTAGGTGTGAGATCT
CACCTTTGTAGCCATCTAAAACCGTAATTATTATAATAAACTGGGCAGTTTACAATCAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCCCCCGTCCCAATTTTAGTTTTCATGCAATAAAAAGGCTGAACTTTTTATTCCGTA
AAACATGAAGGACAAAACTCAAAAATGTATTTCAGGTCAATCACCAGAAAAATCCCTCCC
CCTTGCCTTTTCCCAAAAGGACCGTTAATGTACATGACACTTTTTTGTTGTTTTTGTTTG
GGGTTTTACCGTTGTTGGGATTTTTTTTATTTTCGGGGGGTTTTTTTGGGGGAAAAAATT
TTTTTAAATGGAAGCTTCGAGCAAGCCTCCCCCCACCCCATCCCAATCAACCTCTTTGCT
TTCTTCTTAAAAAAAAAAAAAAAAAAAGAAAAAGAAAAAAGGACAAAAAAAAATCCAAGC
CCTTTTGTCTGTCTGTACCCAAGCCCTTCCACCAGGAAAGCTAGTCTAGGTGTGAGATCT
CACCTTTGTAGCCATCTAAAACCGTAATTATTATAATAAACTGGGCAGTTTACAATCAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               188-333, - strand, RNAz p=0.96876

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-333, - strand, RNAz p=0.96876

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-477, gnl|bosTau2|chr3 (60872530-60873011)
               

               
               4-477, gnl|Hg17|chr1 (54404675-54404213)
               

               
               4-477, gnl|Mm7|chr4 (106424621-106425137)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-477, gnl|bosTau2|chr3 (60872530-60873011)
               

               
               4-477, gnl|Hg17|chr1 (54404675-54404213)
               

               
               4-477, gnl|Mm7|chr4 (106424621-106425137)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.341006)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.341006)
               

               
               jej (0.0989218)

	4-477, gnl\|bosTau2\|chr3 (60872530-60873011)
	4-477, gnl\|Hg17\|chr1 (54404675-54404213)
	4-477, gnl\|Mm7\|chr4 (106424621-106425137)