Non-Coding RNA Search

Ss1.1-Pig1-65I01.5

Sequence:


               
               CTCCATCCCTGGCTCTGGGGAGAAGGGCAAGGGGTGACCCCCAAGGGGACCTTTCTGCTC
CCCGTCCCCCTGCCCCTTGGGACAGCCACCAAAAATACAGGTCCCAGAGTCCATCGAGTG
CTGGAGAGCCCAGGCCCTCCCCTGGTTTTAAGGGGGAGTGGCGTGTGGAGGGGAGAGCAG
GCTGGTCCATTGTTCTTCTTTCCCCACCCAGGCTGTACCTTCCAGCACCTGGGGGGTGGG
GGAAGATGGAGGAGATGAGCCACCTTTGACCCCAGACCCCGGACAGAGAAGATGGGTGTT
CTATTTTGTGCCTCCTGACTATGTCTGGCTAGGAGATTCGCCTTAAATGCTCCCTATCCC
ATGGATAGGGACTGGCACACAAGAAGCCACACACTCAGCCAATCCAGGCCGAGGCCAAGG
GGTTCTCGCCGCGGTGGCGCCCACCGGCCACTCACCGTTTGGTGGGGCAGAGATGAGCGC
AGGAAGATGCCAGCCCAGTTGGTATTGGCCGGTCAGGGGTGCCGGGGGCCAGAGCAGAGC
CACCAGGCCCCAGAGCCCCCAGACCCTGCCCAGCCCTCCCTCCTCACCTCGGGGAGCTGG
CAGGAAGTCAGAGGCCCCGTCACCCAGCTGCTCCCGCTCTGCAATAGCACTGATCAGTGA
AAACCTACAAGAATGTAGTGGCGATGGAATTACCTGGAACTGTTCCTTTTTTGGGGAAAA
CTAAACAAACAAAAAGGTTTCTGTGTCAGGTATTGGGCTGGATGGGGCAGCTGTGTGTTG
GGGTGGTTTCTTTTTTTTTCTGTTATTTTGTTTGGGTTTTGTTTGTGTTTTTTAATAATG
TTTACAATCTGCCTCAATCACTCTGTCTTTTATAAAGATTCCACCTCCAGTCCTCTCCCC
TCCCCCCCACCCAGGCCCTCGAGGCTGTTAGGAGATGCTTGAAAAACTCAACGAAATACC
AATCCAAGTCAAACTTTGCACATATTTATATTTATATTCAAAGAAGAAACATTTCAGTAA
TTTATAATAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCATCCCTGGCTCTGGGGAGAAGGGCAAGGGGTGACCCCCAAGGGGACCTTTCTGCTC
CCCGTCCCCCTGCCCCTTGGGACAGCCACCAAAAATACAGGTCCCAGAGTCCATCGAGTG
CTGGAGAGCCCAGGCCCTCCCCTGGTTTTAAGGGGGAGTGGCGTGTGGAGGGGAGAGCAG
GCTGGTCCATTGTTCTTCTTTCCCCACCCAGGCTGTACCTTCCAGCACCTGGGGGGTGGG
GGAAGATGGAGGAGATGAGCCACCTTTGACCCCAGACCCCGGACAGAGAAGATGGGTGTT
CTATTTTGTGCCTCCTGACTATGTCTGGCTAGGAGATTCGCCTTAAATGCTCCCTATCCC
ATGGATAGGGACTGGCACACAAGAAGCCACACACTCAGCCAATCCAGGCCGAGGCCAAGG
GGTTCTCGCCGCGGTGGCGCCCACCGGCCACTCACCGTTTGGTGGGGCAGAGATGAGCGC
AGGAAGATGCCAGCCCAGTTGGTATTGGCCGGTCAGGGGTGCCGGGGGCCAGAGCAGAGC
CACCAGGCCCCAGAGCCCCCAGACCCTGCCCAGCCCTCCCTCCTCACCTCGGGGAGCTGG
CAGGAAGTCAGAGGCCCCGTCACCCAGCTGCTCCCGCTCTGCAATAGCACTGATCAGTGA
AAACCTACAAGAATGTAGTGGCGATGGAATTACCTGGAACTGTTCCTTTTTTGGGGAAAA
CTAAACAAACAAAAAGGTTTCTGTGTCAGGTATTGGGCTGGATGGGGCAGCTGTGTGTTG
GGGTGGTTTCTTTTTTTTTCTGTTATTTTGTTTGGGTTTTGTTTGTGTTTTTTAATAATG
TTTACAATCTGCCTCAATCACTCTGTCTTTTATAAAGATTCCACCTCCAGTCCTCTCCCC
TCCCCCCCACCCAGGCCCTCGAGGCTGTTAGGAGATGCTTGAAAAACTCAACGAAATACC
AATCCAAGTCAAACTTTGCACATATTTATATTTATATTCAAAGAAGAAACATTTCAGTAA
TTTATAATAAAG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-236, - strand, RNAz p=0.964856
               

               
               273-428, + strand, RNAz p=0.766276
               

               
               680-773, - strand, RNAz p=0.969152

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-236, - strand, RNAz p=0.964856
               

               
               273-428, + strand, RNAz p=0.766276
               

               
               680-773, - strand, RNAz p=0.969152

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               172-280, + strand, RNAmicro p=0.990243

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               172-280, + strand, RNAmicro p=0.990243

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003955, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003955, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-470, gnl|bosTau2|chr19 (45776856-45776400)
               

               
               1-470, gnl|Hg17|chr17 (73865564-73865099)
               

               
               1-470, gnl|Mm7|chr11 (118076059-118075671)
               


               
               495-1032, gnl|bosTau2|chr19 (45776273-45775722)
               

               
               495-1032, gnl|Hg17|chr17 (73864995-73864476)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-470, gnl|bosTau2|chr19 (45776856-45776400)
               

               
               1-470, gnl|Hg17|chr17 (73865564-73865099)
               

               
               1-470, gnl|Mm7|chr11 (118076059-118075671)
               


               
               495-1032, gnl|bosTau2|chr19 (45776273-45775722)
               

               
               495-1032, gnl|Hg17|chr17 (73864995-73864476)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cag (0.302389)
               

               
               pla (0.267344)
               

               
               cmu (0.186393)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.302389)
               

               
               pla (0.267344)
               

               
               cmu (0.186393)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)

	1-236, - strand, RNAz p=0.964856
	273-428, + strand, RNAz p=0.766276
	680-773, - strand, RNAz p=0.969152

	1-470, gnl\|bosTau2\|chr19 (45776856-45776400)
	1-470, gnl\|Hg17\|chr17 (73865564-73865099)
	1-470, gnl\|Mm7\|chr11 (118076059-118075671)

	495-1032, gnl\|bosTau2\|chr19 (45776273-45775722)
	495-1032, gnl\|Hg17\|chr17 (73864995-73864476)

	cag (0.302389)
	pla (0.267344)
	cmu (0.186393)
	tra (0.123092)
	eje (0.0988338)