Non-Coding RNA Search

Ss1.1-Pig1-65O01.5

Sequence:


               
               GGGCTGTGGGAGCTGTACACAAGTGGGAACTTCCTTTCCCTCACTTCCTTTACCCTCTCG
TTGGAGCATTTCAGCCGTTTGCTACCTCGATTCCTCCTGTGTTGGACAGAGGCTAAGGGC
AGCGCAAGCCTGATCTTTCCTGCCTACCTGCCCATCTGTTCCCACCCCCAAATGGATGGA
CAGTTTGCTGGCTGTTAATAAGAATAAGGACTGGTGTGGGAGGCGTCTCCCTCGACCCAA
GGTGAGGTTGATCTCTCCCCACTACAACTAGTTGTGCCCCCACACACACACACACAACAC
ACACTGCACCACCAATTGAGAGGGCATAGGATAGGGATCAGGAAGGGCTCTGGATGCCTG
TGCCTGTGGGGAGTTGCCCCATCCCACCTACTCTGTCTAATCTCCCTTGCCCTTACACAT
CCAGCGCCCTGTGTAAGGGACAGCACCTGAGCGCTGGTGCCAGTAGCTCTGAGGAGCCCA
CCTCCCCTTCCCCTACAGTATACCCATCCCTTCAGGATCAGTCAAGAGAAAGTACTGGAA
CCCCTGGATAGGGACAGAAAGGAGAGAACCATAAAAGGAATACTTAAAATGTGAAAGCTT
GTAAATAGTCTAGTCCATGATATTGTTGGAGCAGAGTCTGATTTCTACATAGAAATCACT
GTTTTTTGTTTTTTGTTTTTAAATCCTTACTGTGCGAACTCTGTGCTTTAAGAGTGTGAG
AAATGGCTTGGGGAGGGTAGCCCTCAATCTAGGGAGGCTGTTGTGTTGTTTGTTCAATAA
AATTGTTTGTAGACCCTGCGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTGTGGGAGCTGTACACAAGTGGGAACTTCCTTTCCCTCACTTCCTTTACCCTCTCG
TTGGAGCATTTCAGCCGTTTGCTACCTCGATTCCTCCTGTGTTGGACAGAGGCTAAGGGC
AGCGCAAGCCTGATCTTTCCTGCCTACCTGCCCATCTGTTCCCACCCCCAAATGGATGGA
CAGTTTGCTGGCTGTTAATAAGAATAAGGACTGGTGTGGGAGGCGTCTCCCTCGACCCAA
GGTGAGGTTGATCTCTCCCCACTACAACTAGTTGTGCCCCCACACACACACACACAACAC
ACACTGCACCACCAATTGAGAGGGCATAGGATAGGGATCAGGAAGGGCTCTGGATGCCTG
TGCCTGTGGGGAGTTGCCCCATCCCACCTACTCTGTCTAATCTCCCTTGCCCTTACACAT
CCAGCGCCCTGTGTAAGGGACAGCACCTGAGCGCTGGTGCCAGTAGCTCTGAGGAGCCCA
CCTCCCCTTCCCCTACAGTATACCCATCCCTTCAGGATCAGTCAAGAGAAAGTACTGGAA
CCCCTGGATAGGGACAGAAAGGAGAGAACCATAAAAGGAATACTTAAAATGTGAAAGCTT
GTAAATAGTCTAGTCCATGATATTGTTGGAGCAGAGTCTGATTTCTACATAGAAATCACT
GTTTTTTGTTTTTTGTTTTTAAATCCTTACTGTGCGAACTCTGTGCTTTAAGAGTGTGAG
AAATGGCTTGGGGAGGGTAGCCCTCAATCTAGGGAGGCTGTTGTGTTGTTTGTTCAATAA
AATTGTTTGTAGACCCTGCGAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               171-285, - strand, RNAz p=0.590138
               

               
               454-567, - strand, RNAz p=0.679923

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-285, - strand, RNAz p=0.590138
               

               
               454-567, - strand, RNAz p=0.679923

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               72-285, gnl|bosTau2|chr23 (37543495-37543701)
               

               
               72-285, gnl|Hg17|chr3 (50338080-50337871)
               

               
               72-285, gnl|Mm7|chr9 (107294840-107295040)
               


               
               304-803, gnl|bosTau2|chr23 (37543696-37544161)
               

               
               304-803, gnl|Hg17|chr3 (50337876-50337341)
               

               
               304-803, gnl|Mm7|chr9 (107295040-107295563)
               


               
               604-799, gnl|bosTau2|chr22 (38578941-38578758)
               

               
               604-799, gnl|Hg17|chr3 (50337523-50337345)
               

               
               604-799, gnl|Mm7|chr9 (107295370-107295559)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-285, gnl|bosTau2|chr23 (37543495-37543701)
               

               
               72-285, gnl|Hg17|chr3 (50338080-50337871)
               

               
               72-285, gnl|Mm7|chr9 (107294840-107295040)
               


               
               304-803, gnl|bosTau2|chr23 (37543696-37544161)
               

               
               304-803, gnl|Hg17|chr3 (50337876-50337341)
               

               
               304-803, gnl|Mm7|chr9 (107295040-107295563)
               


               
               604-799, gnl|bosTau2|chr22 (38578941-38578758)
               

               
               604-799, gnl|Hg17|chr3 (50337523-50337345)
               

               
               604-799, gnl|Mm7|chr9 (107295370-107295559)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               ste (0.135208)

	171-285, - strand, RNAz p=0.590138
	454-567, - strand, RNAz p=0.679923

	72-285, gnl\|bosTau2\|chr23 (37543495-37543701)
	72-285, gnl\|Hg17\|chr3 (50338080-50337871)
	72-285, gnl\|Mm7\|chr9 (107294840-107295040)

	304-803, gnl\|bosTau2\|chr23 (37543696-37544161)
	304-803, gnl\|Hg17\|chr3 (50337876-50337341)
	304-803, gnl\|Mm7\|chr9 (107295040-107295563)

	604-799, gnl\|bosTau2\|chr22 (38578941-38578758)
	604-799, gnl\|Hg17\|chr3 (50337523-50337345)
	604-799, gnl\|Mm7\|chr9 (107295370-107295559)

	fce (0.271592)
	fbs (0.175346)
	eye (0.170503)
	cje (0.165235)
	cki (0.165235)
	eli (0.151814)
	spl (0.143184)
	nca (0.136874)
	che (0.136314)
	ste (0.135208)