Non-Coding RNA Search

Ss1.1-Pig1-66A05.5

Sequence:


               
               TAGAATTTAAAGGAAATTGATAGTCCTCCCATGCTGTTTTAGAGTAAAGGGAGAAAGAGG
CAGAAAGATAAAGTACCATATAAAGAGAGATCCTTAAGTGAATGCATTCCTAGTCCTGAA
TTAGGCTTTTCAGAAAATATCTCAAGCAATGCCTTTGTGTCACCATAACCTTCCTCCCCC
ATTTCTTGGCATAGAATGTAGCAAGGCCATAACTGAAAAGCTCGTCAGTAAAGTATAAAA
CCCTAAATAAGCATTTTGCTATGATGCCTTTTTATACTTGTTTTTAAAAATACAAACCTA
CATTTAGGAGTTTAGGGTTAGTAAAGATATGATAGTAAGTTGTAGGTAAACAGGTTAACC
TAAAAAAAAAGGTTTACAGTTTCTACTGAGATTACATGAGCCTGACTATAACTGGTAATA
GGATTTGTATTAGTTGTAGCCTGTAAGTTAATTAAAAGGACCAGGGCACCTAATTCTTGT
CAGTTCTCCAGTTCACCTTGGTGCCATTCATGATATAAGCTGTTTACAGGAAATATAATT
TCTGTAGCAAAGTGTAATTCTTTTTCCTTTAAAAAGATACTAAGTTTAAAATACAGCTTG
TCAAAAGGAACAGAGAATAACAGTTTCCTATATTTCCTGTATAAATGCATTCGAGGTTGA
AATTCCTAAACACAAGAAGAAACCCATAAAATTGTAAAATTTAGAGCTTTAAAATATGAC
TTGAAAAGTAGCAGGAAAGGGTAAAGCAGAACAAAGTCCTGTTTCCTTTGGCATAAGAAT
TTTTTTTTTCTTAATGAAGATGGAAAATGCTTTCTTGTTTTAAAAATATTTTGTCTACTT
GCCAGCATTTTTTTTTTTTTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAGAATTTAAAGGAAATTGATAGTCCTCCCATGCTGTTTTAGAGTAAAGGGAGAAAGAGG
CAGAAAGATAAAGTACCATATAAAGAGAGATCCTTAAGTGAATGCATTCCTAGTCCTGAA
TTAGGCTTTTCAGAAAATATCTCAAGCAATGCCTTTGTGTCACCATAACCTTCCTCCCCC
ATTTCTTGGCATAGAATGTAGCAAGGCCATAACTGAAAAGCTCGTCAGTAAAGTATAAAA
CCCTAAATAAGCATTTTGCTATGATGCCTTTTTATACTTGTTTTTAAAAATACAAACCTA
CATTTAGGAGTTTAGGGTTAGTAAAGATATGATAGTAAGTTGTAGGTAAACAGGTTAACC
TAAAAAAAAAGGTTTACAGTTTCTACTGAGATTACATGAGCCTGACTATAACTGGTAATA
GGATTTGTATTAGTTGTAGCCTGTAAGTTAATTAAAAGGACCAGGGCACCTAATTCTTGT
CAGTTCTCCAGTTCACCTTGGTGCCATTCATGATATAAGCTGTTTACAGGAAATATAATT
TCTGTAGCAAAGTGTAATTCTTTTTCCTTTAAAAAGATACTAAGTTTAAAATACAGCTTG
TCAAAAGGAACAGAGAATAACAGTTTCCTATATTTCCTGTATAAATGCATTCGAGGTTGA
AATTCCTAAACACAAGAAGAAACCCATAAAATTGTAAAATTTAGAGCTTTAAAATATGAC
TTGAAAAGTAGCAGGAAAGGGTAAAGCAGAACAAAGTCCTGTTTCCTTTGGCATAAGAAT
TTTTTTTTTCTTAATGAAGATGGAAAATGCTTTCTTGTTTTAAAAATATTTTGTCTACTT
GCCAGCATTTTTTTTTTTTTTTAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-853, gnl|bosTau2|chr16 (3813601-3814446)
               

               
               1-853, gnl|canFam2|chr7 (9140690-9141404)
               

               
               1-853, gnl|echTel1|scaffold_261703 (9144-9814)
               

               
               1-853, gnl|Hg17|chr1 (203606607-203605763)
               

               
               1-853, gnl|hg17|chr9 (6281206-6281896)
               

               
               1-853, gnl|loxAfr1|scaffold_65166 (4651-3763)
               

               
               1-853, gnl|mm7|chr1 (130628439-130627832)
               

               
               1-853, gnl|oryCun1|scaffold_210184 (310799-311518)
               

               
               1-853, gnl|panTro1|chr11 (6206443-6207126)
               

               
               1-853, gnl|rheMac2|chr1 (163313790-163313112)
               

               
               1-853, gnl|rn3|chr13 (43673665-43673078)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-853, gnl|bosTau2|chr16 (3813601-3814446)
               

               
               1-853, gnl|canFam2|chr7 (9140690-9141404)
               

               
               1-853, gnl|echTel1|scaffold_261703 (9144-9814)
               

               
               1-853, gnl|Hg17|chr1 (203606607-203605763)
               

               
               1-853, gnl|hg17|chr9 (6281206-6281896)
               

               
               1-853, gnl|loxAfr1|scaffold_65166 (4651-3763)
               

               
               1-853, gnl|mm7|chr1 (130628439-130627832)
               

               
               1-853, gnl|oryCun1|scaffold_210184 (310799-311518)
               

               
               1-853, gnl|panTro1|chr11 (6206443-6207126)
               

               
               1-853, gnl|rheMac2|chr1 (163313790-163313112)
               

               
               1-853, gnl|rn3|chr13 (43673665-43673078)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               liv (0.146284)

	1-853, gnl\|bosTau2\|chr16 (3813601-3814446)
	1-853, gnl\|canFam2\|chr7 (9140690-9141404)
	1-853, gnl\|echTel1\|scaffold_261703 (9144-9814)
	1-853, gnl\|Hg17\|chr1 (203606607-203605763)
	1-853, gnl\|hg17\|chr9 (6281206-6281896)
	1-853, gnl\|loxAfr1\|scaffold_65166 (4651-3763)
	1-853, gnl\|mm7\|chr1 (130628439-130627832)
	1-853, gnl\|oryCun1\|scaffold_210184 (310799-311518)
	1-853, gnl\|panTro1\|chr11 (6206443-6207126)
	1-853, gnl\|rheMac2\|chr1 (163313790-163313112)
	1-853, gnl\|rn3\|chr13 (43673665-43673078)