Non-Coding RNA Search

Ss1.1-Pig1-66J24.5

Sequence:


               
               TGATGGCGGCCAGCACGGCCCTAGCCTTGGCCCTATGGCTACTATTGCCTCCAGTGGAGG
TAGGAGGGGCAGGGCCCCCACCGATCCAGGATGGCGAGTTTACATTCCTGCTTCCTGCGG
GGCGGAAGCAATGTTTCTATCAGTCTGCGCCGGCCAACGCAAGCCTGGAGACTGAGTACC
AGGTGATCGCAGGTGCTGGGCTGGACGTGGATTTCACTCTGGAGAGCCCTCAGGGAGTGC
TGCTGGTCAGCGAGTCCCGCAAGGCAGATGGTGTGCACACGGTGGAGCCCACGGAGGCAG
GGGACTACAAACTGTGCTTTGACAACTCCTTCAGCACAATCTCCGAGAAGCTCGTGTTCT
TTGAACTCATCTTTGACAGCCTGCAGGATGATGAAGAGGTGGAGGGCTGGGCAGAGGCTG
TGGAGCCTGAGGAGATGCTGGATGTCAAGATGGAGGACATCAAGGAGTCCATTGAGACCA
TGAGGACCCGGCTTGAGCGCAGCATCCAAATGCTGACTCTGCTGCGGGCCTTTGAGGCAC
GTGACCGCAACCTGCAAGAGGGCAACCTGGAGCGAGTCAACTTCTGGTCAGCTGTGAATG
TGGCCGTGTTGCTACTCGTGGCCGTGCTGCAAGTCTGCACTCTCAAGCGCTTCTTTCAGG
ACAAGCGCCCTGTGCCTACGTAGCCCCCTGCCATGGAAGAACAGGGGAAAGGAGGAGCAG
CAAGGCGCATGCGTGAGACTGGGGGGGTCCCTTCCCCAGCTTAGTTTCCTACAGGAAGGG
AAGCTGTGCAGTCTGGGCCTGAGGTGTGGCCCCTGCTTGTCCCCTCCCTTCCAGGGCCCA
GCAAGAACACAGGCTGGCTTGTAGGCAAGGGCCCCCCAGGAAGGATAGCTCAGTGGCTGA
ACCTGTTTTCCTGGAAAACTGTGCATGGGGGGCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATGGCGGCCAGCACGGCCCTAGCCTTGGCCCTATGGCTACTATTGCCTCCAGTGGAGG
TAGGAGGGGCAGGGCCCCCACCGATCCAGGATGGCGAGTTTACATTCCTGCTTCCTGCGG
GGCGGAAGCAATGTTTCTATCAGTCTGCGCCGGCCAACGCAAGCCTGGAGACTGAGTACC
AGGTGATCGCAGGTGCTGGGCTGGACGTGGATTTCACTCTGGAGAGCCCTCAGGGAGTGC
TGCTGGTCAGCGAGTCCCGCAAGGCAGATGGTGTGCACACGGTGGAGCCCACGGAGGCAG
GGGACTACAAACTGTGCTTTGACAACTCCTTCAGCACAATCTCCGAGAAGCTCGTGTTCT
TTGAACTCATCTTTGACAGCCTGCAGGATGATGAAGAGGTGGAGGGCTGGGCAGAGGCTG
TGGAGCCTGAGGAGATGCTGGATGTCAAGATGGAGGACATCAAGGAGTCCATTGAGACCA
TGAGGACCCGGCTTGAGCGCAGCATCCAAATGCTGACTCTGCTGCGGGCCTTTGAGGCAC
GTGACCGCAACCTGCAAGAGGGCAACCTGGAGCGAGTCAACTTCTGGTCAGCTGTGAATG
TGGCCGTGTTGCTACTCGTGGCCGTGCTGCAAGTCTGCACTCTCAAGCGCTTCTTTCAGG
ACAAGCGCCCTGTGCCTACGTAGCCCCCTGCCATGGAAGAACAGGGGAAAGGAGGAGCAG
CAAGGCGCATGCGTGAGACTGGGGGGGTCCCTTCCCCAGCTTAGTTTCCTACAGGAAGGG
AAGCTGTGCAGTCTGGGCCTGAGGTGTGGCCCCTGCTTGTCCCCTCCCTTCCAGGGCCCA
GCAAGAACACAGGCTGGCTTGTAGGCAAGGGCCCCCCAGGAAGGATAGCTCAGTGGCTGA
ACCTGTTTTCCTGGAAAACTGTGCATGGGGGGCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q13445_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q13445_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-120, + strand, RNAz p=0.579319
               

               
               737-853, - strand, RNAz p=0.626725

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.579319
               

               
               737-853, - strand, RNAz p=0.626725

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-184, gnl|bosTau2|chr7 (9936564-9936381)
               

               
               1-184, gnl|Hg17|chr19 (10807866-10807683)
               

               
               1-184, gnl|Mm7|chr9 (21389524-21389341)
               


               
               463-936, gnl|bosTau2|chr7 (9934320-9933844)
               

               
               463-936, gnl|Hg17|chr19 (10804891-10804433)
               

               
               463-936, gnl|Mm7|chr9 (21387742-21387311)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-184, gnl|bosTau2|chr7 (9936564-9936381)
               

               
               1-184, gnl|Hg17|chr19 (10807866-10807683)
               

               
               1-184, gnl|Mm7|chr9 (21389524-21389341)
               


               
               463-936, gnl|bosTau2|chr7 (9934320-9933844)
               

               
               463-936, gnl|Hg17|chr19 (10804891-10804433)
               

               
               463-936, gnl|Mm7|chr9 (21387742-21387311)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	1-120, + strand, RNAz p=0.579319
	737-853, - strand, RNAz p=0.626725

	1-184, gnl\|bosTau2\|chr7 (9936564-9936381)
	1-184, gnl\|Hg17\|chr19 (10807866-10807683)
	1-184, gnl\|Mm7\|chr9 (21389524-21389341)

	463-936, gnl\|bosTau2\|chr7 (9934320-9933844)
	463-936, gnl\|Hg17\|chr19 (10804891-10804433)
	463-936, gnl\|Mm7\|chr9 (21387742-21387311)