Non-Coding RNA Search

Ss1.1-Pig1-66K08.5

Sequence:


               
               GAGTTTCCACAGTGATCGCCCAGAGCCGGCTGTCCCGCCACTCTGAGGCTGCTCCTGGAG
ACTCTGGGCCGGCCCCATCGTCGCTGCAGGAGCAGAGGAAAGCACGCAGAGAAGCCCTGG
AGAAGCTGGGGCTACCCCAGGACCAAGATGAGCCCAGCCCTCACTTAAGCAGACCCTCTG
TCAGACTCAAGGAGACTCGCGCTCCAGCCCCCTCCCCAGCTCCAGCTCAGGTCTCAGCAG
CTATGCCTGCAGCAGGAAAGGCTCTGGCTCCCGCATCTACACAGGGGCCTTCTTCGGGGA
AGGCACCAGTTCCAGCTCAGCAGTCTTCTCCAGGCAAGGGTTTGATTCCTGCCCAGGAAC
CCACTTCAGGGAAAGTTCCAGCTGCCAAATCCATGCCAATTCCCATCCCTAAGGCCCCAC
GGGCCAATAGTCCCCTGACTCAGCGGAAGCCAGACTCAGGGCTGACTCTCCAGGAGAGCA
GCATCCCTGGCCTGAGACAGATGAACTTCAAGTCCAACACGCTGGAGCGTTCAGGTGTGG
GGCTGAGCAGCTACCTCTCAGCTGAGAAAGAGCCCAGCCCCCAAACCAGCGCCTCTCTGG
GAAAAAGCTCCTTCTTAGACAGGATCCCGCCCTGCCTCCCTGGGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTTTCCACAGTGATCGCCCAGAGCCGGCTGTCCCGCCACTCTGAGGCTGCTCCTGGAG
ACTCTGGGCCGGCCCCATCGTCGCTGCAGGAGCAGAGGAAAGCACGCAGAGAAGCCCTGG
AGAAGCTGGGGCTACCCCAGGACCAAGATGAGCCCAGCCCTCACTTAAGCAGACCCTCTG
TCAGACTCAAGGAGACTCGCGCTCCAGCCCCCTCCCCAGCTCCAGCTCAGGTCTCAGCAG
CTATGCCTGCAGCAGGAAAGGCTCTGGCTCCCGCATCTACACAGGGGCCTTCTTCGGGGA
AGGCACCAGTTCCAGCTCAGCAGTCTTCTCCAGGCAAGGGTTTGATTCCTGCCCAGGAAC
CCACTTCAGGGAAAGTTCCAGCTGCCAAATCCATGCCAATTCCCATCCCTAAGGCCCCAC
GGGCCAATAGTCCCCTGACTCAGCGGAAGCCAGACTCAGGGCTGACTCTCCAGGAGAGCA
GCATCCCTGGCCTGAGACAGATGAACTTCAAGTCCAACACGCTGGAGCGTTCAGGTGTGG
GGCTGAGCAGCTACCTCTCAGCTGAGAAAGAGCCCAGCCCCCAAACCAGCGCCTCTCTGG
GAAAAAGCTCCTTCTTAGACAGGATCCCGCCCTGCCTCCCTGGGCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52545725|emb|CAH56284.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52545725|emb|CAH56284.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               121-234, - strand, RNAz p=0.721078
               

               
               380-613, - strand, RNAz p=0.731097

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-234, - strand, RNAz p=0.721078
               

               
               380-613, - strand, RNAz p=0.731097

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-638, gnl|bosTau2|chr16 (3843619-3844236)
               

               
               2-638, gnl|Hg17|chr1 (203584567-203583938)
               

               
               2-638, gnl|Mm7|chr1 (130647076-130647705)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-638, gnl|bosTau2|chr16 (3843619-3844236)
               

               
               2-638, gnl|Hg17|chr1 (203584567-203583938)
               

               
               2-638, gnl|Mm7|chr1 (130647076-130647705)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	121-234, - strand, RNAz p=0.721078
	380-613, - strand, RNAz p=0.731097

	2-638, gnl\|bosTau2\|chr16 (3843619-3844236)
	2-638, gnl\|Hg17\|chr1 (203584567-203583938)
	2-638, gnl\|Mm7\|chr1 (130647076-130647705)