Non-Coding RNA Search

Ss1.1-Pig1-66M08.5

Sequence:


               
               CCACCATCTCCTCCTCAGAGCAGCGCCAGAGCTACAAGAATGACTTCAACGCCGAGTATA
GCGAGTACCGAGACCTGCATGCCCGCATTGAGCAGATCACACGGCGCTTCACGCAGCTCG
ATGCCCAGCTCCGGCAGCTCTCCCAGGGCTCCGAGGAGTACGAGACTACTCGTGGGCAGA
TTTTGCAGGAATATCGAAAAATCAAAAAGACCAACACCAACTACAGCCAGGAGAAGCACC
GCTGTGAGTACCTGCACAGCAAGCTGGCCCACATCAAGAGGCTCATCGCTGAGTATGACC
AGCGGCAGCTGCAGGCCTGGCCTTAGTCTGAAGCCATGGAGCAGGAGGTCCCACTCGGCC
AGCCAGGCCACCTCGCCACCCGCTGACTGTTCTGGATGATGGGGGAGCTGGGGGCAAGGG
GGAGCTAACGACAAGGAAAAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACCATCTCCTCCTCAGAGCAGCGCCAGAGCTACAAGAATGACTTCAACGCCGAGTATA
GCGAGTACCGAGACCTGCATGCCCGCATTGAGCAGATCACACGGCGCTTCACGCAGCTCG
ATGCCCAGCTCCGGCAGCTCTCCCAGGGCTCCGAGGAGTACGAGACTACTCGTGGGCAGA
TTTTGCAGGAATATCGAAAAATCAAAAAGACCAACACCAACTACAGCCAGGAGAAGCACC
GCTGTGAGTACCTGCACAGCAAGCTGGCCCACATCAAGAGGCTCATCGCTGAGTATGACC
AGCGGCAGCTGCAGGCCTGGCCTTAGTCTGAAGCCATGGAGCAGGAGGTCCCACTCGGCC
AGCCAGGCCACCTCGCCACCCGCTGACTGTTCTGGATGATGGGGGAGCTGGGGGCAAGGG
GGAGCTAACGACAAGGAAAAAAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50761124|ref|XP_418243.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50761124|ref|XP_418243.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               208-327, - strand, RNAz p=0.541869

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               208-327, - strand, RNAz p=0.541869

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-164, gnl|bosTau2|chr7 (1900712-1900549)
               

               
               1-164, gnl|canFam2|chr20 (47589702-47589467)
               

               
               1-164, gnl|danRer3|chr22 (20237190-20237008)
               

               
               1-164, gnl|dasNov1|scaffold_48038 (3468-3289)
               

               
               1-164, gnl|echTel1|scaffold_278278 (2939-2762)
               

               
               1-164, gnl|fr1|chrUn (97761165-97761349)
               

               
               1-164, gnl|galGal2|chr28 (3281291-3281101)
               

               
               1-164, gnl|hg17|chr19 (18418110-18418329)
               

               
               1-164, gnl|Hg17|chr19 (18418282-18418119)
               

               
               1-164, gnl|loxAfr1|scaffold_32888 (38239-38420)
               

               
               1-164, gnl|mm7|chr8 (69046009-69045813)
               

               
               1-164, gnl|Mm7|chr8 (69045842-69046005)
               

               
               1-164, gnl|monDom2|scaffold_75 (856132-856346)
               

               
               1-164, gnl|oryCun1|scaffold_202471 (46919-46693)
               

               
               1-164, gnl|rheMac2|chr19 (18053850-18054069)
               

               
               1-164, gnl|rn3|chr16 (19351778-19351974)
               

               
               1-164, gnl|tetNig1|chrUn_random (42480450-42480262)
               

               
               1-164, gnl|xenTro1|scaffold_1031 (362875-362684)
               


               
               208-444, gnl|bosTau2|chr7 (1898821-1898583)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-164, gnl|bosTau2|chr7 (1900712-1900549)
               

               
               1-164, gnl|canFam2|chr20 (47589702-47589467)
               

               
               1-164, gnl|danRer3|chr22 (20237190-20237008)
               

               
               1-164, gnl|dasNov1|scaffold_48038 (3468-3289)
               

               
               1-164, gnl|echTel1|scaffold_278278 (2939-2762)
               

               
               1-164, gnl|fr1|chrUn (97761165-97761349)
               

               
               1-164, gnl|galGal2|chr28 (3281291-3281101)
               

               
               1-164, gnl|hg17|chr19 (18418110-18418329)
               

               
               1-164, gnl|Hg17|chr19 (18418282-18418119)
               

               
               1-164, gnl|loxAfr1|scaffold_32888 (38239-38420)
               

               
               1-164, gnl|mm7|chr8 (69046009-69045813)
               

               
               1-164, gnl|Mm7|chr8 (69045842-69046005)
               

               
               1-164, gnl|monDom2|scaffold_75 (856132-856346)
               

               
               1-164, gnl|oryCun1|scaffold_202471 (46919-46693)
               

               
               1-164, gnl|rheMac2|chr19 (18053850-18054069)
               

               
               1-164, gnl|rn3|chr16 (19351778-19351974)
               

               
               1-164, gnl|tetNig1|chrUn_random (42480450-42480262)
               

               
               1-164, gnl|xenTro1|scaffold_1031 (362875-362684)
               


               
               208-444, gnl|bosTau2|chr7 (1898821-1898583)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               csp (0.161186)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               csp (0.161186)

	1-164, gnl\|bosTau2\|chr7 (1900712-1900549)
	1-164, gnl\|canFam2\|chr20 (47589702-47589467)
	1-164, gnl\|danRer3\|chr22 (20237190-20237008)
	1-164, gnl\|dasNov1\|scaffold_48038 (3468-3289)
	1-164, gnl\|echTel1\|scaffold_278278 (2939-2762)
	1-164, gnl\|fr1\|chrUn (97761165-97761349)
	1-164, gnl\|galGal2\|chr28 (3281291-3281101)
	1-164, gnl\|hg17\|chr19 (18418110-18418329)
	1-164, gnl\|Hg17\|chr19 (18418282-18418119)
	1-164, gnl\|loxAfr1\|scaffold_32888 (38239-38420)
	1-164, gnl\|mm7\|chr8 (69046009-69045813)
	1-164, gnl\|Mm7\|chr8 (69045842-69046005)
	1-164, gnl\|monDom2\|scaffold_75 (856132-856346)
	1-164, gnl\|oryCun1\|scaffold_202471 (46919-46693)
	1-164, gnl\|rheMac2\|chr19 (18053850-18054069)
	1-164, gnl\|rn3\|chr16 (19351778-19351974)
	1-164, gnl\|tetNig1\|chrUn_random (42480450-42480262)
	1-164, gnl\|xenTro1\|scaffold_1031 (362875-362684)

	208-444, gnl\|bosTau2\|chr7 (1898821-1898583)