Non-Coding RNA Search

Ss1.1-Pig1-66P01.5

Sequence:


               
               GTTCTGGGTCCGGTTCATTCGGTTCTGGGCCTCCTGCTGGCTGCTGGGAAAGGCGATCCT
TGGCACATGGCTGGTGGCGAAGAGCAGGTGGAAGGCCGGGGGCAGGAAGGGCAGGTAGCG
GAGCAGCTGGAAGTTCTGGCCGTGGTGGGCGGCCCGGCCCAGCAGGTCATCGAAGGCCAG
CCAGTCAAGGGCCACGCACACGGTGCCCAGGCTGGAGTCCCGCAACCTCAGCCGCAAAAA
GTTGTCAAACAGACCCTGGACCACCTTCTCATGCTCGCCTGCAGAGGCCGCCGCGTGCAG
AATGTGATAGAACCGCTGCGAGGCCATGGTCAGGGGCACCTCGGCAGTGAGGGCTCCCGA
GCCCGTGTGCCCATCACCGAGCAGGAGCGTGGGGGTGGGCACGGTCGGGTCCTGACCCAC
ACGGCGCCTCTGGGCCCGGGGCAGCTGGAAGACCTCCTGCCACACGGAGAAGAGCCCCTT
GCGCTGGTCCTTGAGGCCAACGCGTGTGGTCTGCACAACCTGGATGCTCAGCTTCCGCCG
GCCCCGCCCATGCAGGAACTGCAGGGCGTTGATGCAGGCACGGATGTCATTGTCCGTCTT
CTCGCAGAGGGCCGCCAGGGCGCCCGGGTCGGCCTGCATGCCTCGCTGCTGGGAGATCTC
CTGGAGCCGCTGGGTGAGCCTGGAGGGCAGCGTGGGCGGGAAGTGGAGCAGGAGAGCCTG
CGGCTTCAGCTGCCTGAGCGAAGGTGCAAATTGGTCATTGCAGATGCAGATGATGGGCCT
CATCAGGAGCCCCCCCTCCGCCCGGCGCCGCCGCCCCCCGCCCGCAGCCATGGCCGGGGC
CCCCGGCTCTGCCTCCTGCGGGCCCTTGCGGTCCAAGACGCTCAAGAGGACGCCAGTAGG
CCACAGTGCTGAGGATTCCGACCGGACCGCTGTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTGGGTCCGGTTCATTCGGTTCTGGGCCTCCTGCTGGCTGCTGGGAAAGGCGATCCT
TGGCACATGGCTGGTGGCGAAGAGCAGGTGGAAGGCCGGGGGCAGGAAGGGCAGGTAGCG
GAGCAGCTGGAAGTTCTGGCCGTGGTGGGCGGCCCGGCCCAGCAGGTCATCGAAGGCCAG
CCAGTCAAGGGCCACGCACACGGTGCCCAGGCTGGAGTCCCGCAACCTCAGCCGCAAAAA
GTTGTCAAACAGACCCTGGACCACCTTCTCATGCTCGCCTGCAGAGGCCGCCGCGTGCAG
AATGTGATAGAACCGCTGCGAGGCCATGGTCAGGGGCACCTCGGCAGTGAGGGCTCCCGA
GCCCGTGTGCCCATCACCGAGCAGGAGCGTGGGGGTGGGCACGGTCGGGTCCTGACCCAC
ACGGCGCCTCTGGGCCCGGGGCAGCTGGAAGACCTCCTGCCACACGGAGAAGAGCCCCTT
GCGCTGGTCCTTGAGGCCAACGCGTGTGGTCTGCACAACCTGGATGCTCAGCTTCCGCCG
GCCCCGCCCATGCAGGAACTGCAGGGCGTTGATGCAGGCACGGATGTCATTGTCCGTCTT
CTCGCAGAGGGCCGCCAGGGCGCCCGGGTCGGCCTGCATGCCTCGCTGCTGGGAGATCTC
CTGGAGCCGCTGGGTGAGCCTGGAGGGCAGCGTGGGCGGGAAGTGGAGCAGGAGAGCCTG
CGGCTTCAGCTGCCTGAGCGAAGGTGCAAATTGGTCATTGCAGATGCAGATGATGGGCCT
CATCAGGAGCCCCCCCTCCGCCCGGCGCCGCCGCCCCCCGCCCGCAGCCATGGCCGGGGC
CCCCGGCTCTGCCTCCTGCGGGCCCTTGCGGTCCAAGACGCTCAAGAGGACGCCAGTAGG
CCACAGTGCTGAGGATTCCGACCGGACCGCTGTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7Z6Y5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7Z6Y5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               69-188, + strand, RNAz p=0.687407

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               69-188, + strand, RNAz p=0.687407

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               30-258, gnl|bosTau2|chr25 (1127163-1127391)
               

               
               30-258, gnl|Hg17|chr16 (785358-785130)
               

               
               30-258, gnl|Mm7|chr17 (23904298-23904526)
               


               
               427-561, gnl|bosTau2|chr25 (1128487-1128621)
               

               
               427-561, gnl|Hg17|chr16 (783276-783142)
               

               
               427-561, gnl|Mm7|chr17 (23905885-23906019)
               


               
               753-891, gnl|bosTau2|chr25 (1129327-1129465)
               

               
               753-891, gnl|Hg17|chr16 (782590-782452)
               

               
               753-891, gnl|Mm7|chr17 (23906644-23906779)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-258, gnl|bosTau2|chr25 (1127163-1127391)
               

               
               30-258, gnl|Hg17|chr16 (785358-785130)
               

               
               30-258, gnl|Mm7|chr17 (23904298-23904526)
               


               
               427-561, gnl|bosTau2|chr25 (1128487-1128621)
               

               
               427-561, gnl|Hg17|chr16 (783276-783142)
               

               
               427-561, gnl|Mm7|chr17 (23905885-23906019)
               


               
               753-891, gnl|bosTau2|chr25 (1129327-1129465)
               

               
               753-891, gnl|Hg17|chr16 (782590-782452)
               

               
               753-891, gnl|Mm7|chr17 (23906644-23906779)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	30-258, gnl\|bosTau2\|chr25 (1127163-1127391)
	30-258, gnl\|Hg17\|chr16 (785358-785130)
	30-258, gnl\|Mm7\|chr17 (23904298-23904526)

	427-561, gnl\|bosTau2\|chr25 (1128487-1128621)
	427-561, gnl\|Hg17\|chr16 (783276-783142)
	427-561, gnl\|Mm7\|chr17 (23905885-23906019)

	753-891, gnl\|bosTau2\|chr25 (1129327-1129465)
	753-891, gnl\|Hg17\|chr16 (782590-782452)
	753-891, gnl\|Mm7\|chr17 (23906644-23906779)