Non-Coding RNA Search

Ss1.1-Pig1-66P07.5

Sequence:


               
               CAAGCCACCAAACGATTACAGGACAAAGAACAAGAATTGGAGCAGTTGACTAAAGAGCTA
CGGCAGGTCAATCTGCAGCAGTTTATCCAGCAGACAGGGACAAAAGTCACCGTTTTGCCA
GCAGAGCCCATTGAGGTGGAGGCATCACATGCAGACATAGAAAGGGAGGCACCATTCCAA
TCTGGGTCCCTGAAGCGGCCTGGCTCCTCTCGGCAGCTCCCCAGTAATCTTCGTATTCTG
CAGAATCCTATCTCGGCTGGTTTTAATCCTGAAGGCATATATGTATAACATCTGCCTTCA
GGGGAGAGACCCAGGAAGGTACCAAGGACAGTGAAAATTCCTTCTTTGATTTGTGCCAAT
GATGAACAGAGGATATATTTCACAAGCCACTGTATCTTTTTTTCTGTCCTAAATTGCATA
CCACTTGGAGCCATACCCTGTGCACTGATGCTGAAGAACAAAGAAACTGTGTTTTCCCAC
ATCTACAGTGTTGACATTCTTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGCCACCAAACGATTACAGGACAAAGAACAAGAATTGGAGCAGTTGACTAAAGAGCTA
CGGCAGGTCAATCTGCAGCAGTTTATCCAGCAGACAGGGACAAAAGTCACCGTTTTGCCA
GCAGAGCCCATTGAGGTGGAGGCATCACATGCAGACATAGAAAGGGAGGCACCATTCCAA
TCTGGGTCCCTGAAGCGGCCTGGCTCCTCTCGGCAGCTCCCCAGTAATCTTCGTATTCTG
CAGAATCCTATCTCGGCTGGTTTTAATCCTGAAGGCATATATGTATAACATCTGCCTTCA
GGGGAGAGACCCAGGAAGGTACCAAGGACAGTGAAAATTCCTTCTTTGATTTGTGCCAAT
GATGAACAGAGGATATATTTCACAAGCCACTGTATCTTTTTTTCTGTCCTAAATTGCATA
CCACTTGGAGCCATACCCTGTGCACTGATGCTGAAGAACAAAGAAACTGTGTTTTCCCAC
ATCTACAGTGTTGACATTCTTGTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               193-345, - strand, RNAz p=0.980752

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-345, - strand, RNAz p=0.980752

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-504, gnl|bosTau2|chr26 (14901403-14901913)
               

               
               1-504, gnl|Hg17|chr12 (26109567-26113235)
               

               
               1-504, gnl|Mm7|chr6 (145906395-145907847)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-504, gnl|bosTau2|chr26 (14901403-14901913)
               

               
               1-504, gnl|Hg17|chr12 (26109567-26113235)
               

               
               1-504, gnl|Mm7|chr6 (145906395-145907847)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eye (0.170503)
               

               
               isp (0.150376)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               isp (0.150376)
               

               
               pla (0.133672)

	1-504, gnl\|bosTau2\|chr26 (14901403-14901913)
	1-504, gnl\|Hg17\|chr12 (26109567-26113235)
	1-504, gnl\|Mm7\|chr6 (145906395-145907847)