Non-Coding RNA Search

Ss1.1-Pig1-67P20.5S

Sequence:


               
               CTGCCCCGTTGTGGGTGCAACCTTGTACCAGGTAGCCCGACCCTGACCTAAAGTAAATTC
CCAGGAGAGTTGATTCCTGGGTTTTGAATTTGCAGTAACAGGTGTGAACATTCTAGCAGC
AGTTTGATGATCATGTATGATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCCCGTTGTGGGTGCAACCTTGTACCAGGTAGCCCGACCCTGACCTAAAGTAAATTC
CCAGGAGAGTTGATTCCTGGGTTTTGAATTTGCAGTAACAGGTGTGAACATTCTAGCAGC
AGTTTGATGATCATGTATGATACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-95, - strand, RNAz p=0.950621

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-95, - strand, RNAz p=0.950621

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               38-113, + strand, RNAmicro p=0.984787

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               38-113, + strand, RNAmicro p=0.984787

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-144, gnl|bosTau2|chr19 (48755943-48756087)
               

               
               1-144, gnl|canFam2|chr9 (6774695-6774890)
               

               
               1-144, gnl|canFam2|chr9 (6774716-6774890)
               

               
               1-144, gnl|echTel1|scaffold_47246 (5135-4952)
               

               
               1-144, gnl|echTel1|scaffold_47246 (5115-4953)
               

               
               1-144, gnl|Hg17|chr17 (72597017-72597160)
               

               
               1-144, gnl|hg17|chr2 (53609234-53609429)
               

               
               1-144, gnl|hg17|chr2 (197376393-197376561)
               

               
               1-144, gnl|mm7|chr11 (117186484-117186289)
               

               
               1-144, gnl|mm7|chr11 (117186463-117186289)
               

               
               1-144, gnl|Mm7|chr11 (117186321-117186470)
               

               
               1-144, gnl|monDom2|scaffold_18 (4700244-4700061)
               

               
               1-144, gnl|panTro1|chr12 (55734344-55734539)
               

               
               1-144, gnl|panTro1|chr13 (87318081-87318249)
               

               
               1-144, gnl|rheMac2|chr12 (60318354-60318516)
               

               
               1-144, gnl|rheMac2|chr13 (53732625-53732820)
               

               
               1-144, gnl|rn3|chr10 (107190873-107190687)
               

               
               1-144, gnl|rn3|chr10 (107190849-107190687)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr19 (48755943-48756087)
               

               
               1-144, gnl|canFam2|chr9 (6774695-6774890)
               

               
               1-144, gnl|canFam2|chr9 (6774716-6774890)
               

               
               1-144, gnl|echTel1|scaffold_47246 (5135-4952)
               

               
               1-144, gnl|echTel1|scaffold_47246 (5115-4953)
               

               
               1-144, gnl|Hg17|chr17 (72597017-72597160)
               

               
               1-144, gnl|hg17|chr2 (53609234-53609429)
               

               
               1-144, gnl|hg17|chr2 (197376393-197376561)
               

               
               1-144, gnl|mm7|chr11 (117186484-117186289)
               

               
               1-144, gnl|mm7|chr11 (117186463-117186289)
               

               
               1-144, gnl|Mm7|chr11 (117186321-117186470)
               

               
               1-144, gnl|monDom2|scaffold_18 (4700244-4700061)
               

               
               1-144, gnl|panTro1|chr12 (55734344-55734539)
               

               
               1-144, gnl|panTro1|chr13 (87318081-87318249)
               

               
               1-144, gnl|rheMac2|chr12 (60318354-60318516)
               

               
               1-144, gnl|rheMac2|chr13 (53732625-53732820)
               

               
               1-144, gnl|rn3|chr10 (107190873-107190687)
               

               
               1-144, gnl|rn3|chr10 (107190849-107190687)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.197844)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)

	1-144, gnl\|bosTau2\|chr19 (48755943-48756087)
	1-144, gnl\|canFam2\|chr9 (6774695-6774890)
	1-144, gnl\|canFam2\|chr9 (6774716-6774890)
	1-144, gnl\|echTel1\|scaffold_47246 (5135-4952)
	1-144, gnl\|echTel1\|scaffold_47246 (5115-4953)
	1-144, gnl\|Hg17\|chr17 (72597017-72597160)
	1-144, gnl\|hg17\|chr2 (53609234-53609429)
	1-144, gnl\|hg17\|chr2 (197376393-197376561)
	1-144, gnl\|mm7\|chr11 (117186484-117186289)
	1-144, gnl\|mm7\|chr11 (117186463-117186289)
	1-144, gnl\|Mm7\|chr11 (117186321-117186470)
	1-144, gnl\|monDom2\|scaffold_18 (4700244-4700061)
	1-144, gnl\|panTro1\|chr12 (55734344-55734539)
	1-144, gnl\|panTro1\|chr13 (87318081-87318249)
	1-144, gnl\|rheMac2\|chr12 (60318354-60318516)
	1-144, gnl\|rheMac2\|chr13 (53732625-53732820)
	1-144, gnl\|rn3\|chr10 (107190873-107190687)
	1-144, gnl\|rn3\|chr10 (107190849-107190687)