Non-Coding RNA Search

Ss1.1-Pig1-68G22.5

Sequence:


               
               GCAGGTTTTTAATGTAGACGAGACAGGGCTTTATTGGAAAAGAATGCCTGAGGGAACACG
TCTCTCGTTGGAAGAGAAAACCGAGCGGTGGGTTGTACCATCCAGGGATCGCTTGATGCT
GCTTCTTGGTGGTAACGCGGCTGGGGACTTTAAGCTGAAGCCCTTGTTAGTGTACCGTTC
AGAAAACCCCAGGGCTCTGAAGGGGTACTCCAAGCCCAATTTGCCTGTAATCTGGCGCTC
AAACAAAAAGGCCTGGGCCACCAGGAGCATCTTTCATGAATGGTTCACGTGCTTTTTTTG
CCCTGCCGTTGAAAAACACTGTGCCCAAAATAACCTCGCCAGCAAAGCCCTGCTCATCTT
AGACAGTGCACCGTGCCATCCAGTAAATTTGAGCGATCTGTCCGATAAGGTAAGGGTGGA
GTATCTTTGTGACAGTACAGCCAACCTGATGCAGCCTGTGGGTCAAGGCATAGCGTCTAC
CTTCAAAGCTCATTACCTAAGAAGGACTTTTGAGCACATCCTCGAAGCAACAGATGGGGA
GGAGACTGCTGAGGTCGGGGCGTTTTGGAGAAACTACAGTATCATGGATGCCGTGGACAA
CATTGCCATAGCCTGGGAGGAGCTCAGACCAGCCACGATGAACAGTGTGTGGAAGAAGAT
GTGGCCTGAGTGTGTTCAGTTCCAGAACGGCTCCCAAGCAGACAGCATCGCACAGCTTCA
AGGGAACATCGGGAGCCTTGCTGACAAAGTGGCTCTCGGAGAGGTGGCGGAAGCTGACGT
GGCGCGACTGCTGCGGTCCCACGAGGAGGGTTTCTCGAATGAGGAGCTGATGCAGCTGGA
GCGGGAGCCACCAGAAGAGGAGGGCAGCGCGGATGCCGCCCCGGCCCTGCGCCAGCTGAC
CCCGCAGGAGCTGTCCCGAGCCTTCTCACATTTCGAGGCCGGCTTACAGGTCCTTACCAG
TCACAGCCCTGATGACGAGTGGAAACGAAAAGTTTCAAATGCCATCAATGATGCAATAAA
CTGCTACCGGGAATTGTACGGCGAGAAGGAGTGGCGCTCGCAGCAGCTCTCCTAGGCTGT
CGTCTGGGCGTGCAACCAAACTTAACCAGAGGTCGGTCTCTGGGACTTTGGGGAGGAAGC
CCAGCCAAGCCTCTGAGTCCTCTTCTGGTGTTTTCATTTTAACACTTGAAAGCATCACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGTTTTTAATGTAGACGAGACAGGGCTTTATTGGAAAAGAATGCCTGAGGGAACACG
TCTCTCGTTGGAAGAGAAAACCGAGCGGTGGGTTGTACCATCCAGGGATCGCTTGATGCT
GCTTCTTGGTGGTAACGCGGCTGGGGACTTTAAGCTGAAGCCCTTGTTAGTGTACCGTTC
AGAAAACCCCAGGGCTCTGAAGGGGTACTCCAAGCCCAATTTGCCTGTAATCTGGCGCTC
AAACAAAAAGGCCTGGGCCACCAGGAGCATCTTTCATGAATGGTTCACGTGCTTTTTTTG
CCCTGCCGTTGAAAAACACTGTGCCCAAAATAACCTCGCCAGCAAAGCCCTGCTCATCTT
AGACAGTGCACCGTGCCATCCAGTAAATTTGAGCGATCTGTCCGATAAGGTAAGGGTGGA
GTATCTTTGTGACAGTACAGCCAACCTGATGCAGCCTGTGGGTCAAGGCATAGCGTCTAC
CTTCAAAGCTCATTACCTAAGAAGGACTTTTGAGCACATCCTCGAAGCAACAGATGGGGA
GGAGACTGCTGAGGTCGGGGCGTTTTGGAGAAACTACAGTATCATGGATGCCGTGGACAA
CATTGCCATAGCCTGGGAGGAGCTCAGACCAGCCACGATGAACAGTGTGTGGAAGAAGAT
GTGGCCTGAGTGTGTTCAGTTCCAGAACGGCTCCCAAGCAGACAGCATCGCACAGCTTCA
AGGGAACATCGGGAGCCTTGCTGACAAAGTGGCTCTCGGAGAGGTGGCGGAAGCTGACGT
GGCGCGACTGCTGCGGTCCCACGAGGAGGGTTTCTCGAATGAGGAGCTGATGCAGCTGGA
GCGGGAGCCACCAGAAGAGGAGGGCAGCGCGGATGCCGCCCCGGCCCTGCGCCAGCTGAC
CCCGCAGGAGCTGTCCCGAGCCTTCTCACATTTCGAGGCCGGCTTACAGGTCCTTACCAG
TCACAGCCCTGATGACGAGTGGAAACGAAAAGTTTCAAATGCCATCAATGATGCAATAAA
CTGCTACCGGGAATTGTACGGCGAGAAGGAGTGGCGCTCGCAGCAGCTCTCCTAGGCTGT
CGTCTGGGCGTGCAACCAAACTTAACCAGAGGTCGGTCTCTGGGACTTTGGGGAGGAAGC
CCAGCCAAGCCTCTGAGTCCTCTTCTGGTGTTTTCATTTTAACACTTGAAAGCATCACAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57086937|ref|XP_536744.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57086937|ref|XP_536744.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               176-1073, - strand, RNAz p=0.728046
               

               
               757-913, - strand, RNAz p=0.997973

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-1073, - strand, RNAz p=0.728046
               

               
               757-913, - strand, RNAz p=0.997973

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1089, gnl|bosTau2|chr18 (15968715-15967625)
               

               
               1-1089, gnl|Hg17|chr16 (88565283-88563877)
               


               
               97-326, gnl|bosTau2|chr11 (35679039-35679265)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1089, gnl|bosTau2|chr18 (15968715-15967625)
               

               
               1-1089, gnl|Hg17|chr16 (88565283-88563877)
               


               
               97-326, gnl|bosTau2|chr11 (35679039-35679265)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ece (0.229305)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               jca (0.11396)

	176-1073, - strand, RNAz p=0.728046
	757-913, - strand, RNAz p=0.997973

	1-1089, gnl\|bosTau2\|chr18 (15968715-15967625)
	1-1089, gnl\|Hg17\|chr16 (88565283-88563877)

	97-326, gnl\|bosTau2\|chr11 (35679039-35679265)

	ece (0.229305)
	nep (0.183925)
	nca (0.136874)
	ute (0.132784)
	jca (0.11396)