Non-Coding RNA Search

Ss1.1-Pig1-69D21.5

Sequence:


               
               ATCAGTGCGAAATATCCTCAGGCCCGTCGGGGGTAAACGTGTGGATTCTGCAGAGGTACA
GAAGGTCTGCAACATCTGCGTCCTCTACCAGACCTCGCTGACGACACTAACCCAGATCCG
GCTGCAGATACTCACAGGTCTCACTTACCTTGATGACCTGCTGCCCAAACTGTGGGCCTT
TATCTGTGAGCTGGGGCCCCACGGAGGGTTAAAGCTCTTCTTGGAATGCCTCAACAATGA
CACTGAAGAGTCTAAGCAGCTCTTGGCCATGCTGATGCTGTTCTGTGACTGTTCCCGGCA
CCTCATCACGATCCTTGATGACATTGAAGTATATGAAGAACAGATTTCATTCAAACTGGA
AGAGCTGGTCACCATCTCCTCTTTTCTGAATTCCTTTGTCTTTAAGATGATCTGGGATGG
AATTGTAGAGAATGCCAAGGGCGAGACCCTGGAGCTGTTCCATTCTGTTCACGGGTGGCT
GATGGTGCTCTACGAGCGGGACTGCCGGCGGCGCTTCGCCCCCGAGGACCACTGGCTGCG
GAAGGATCTCAAGCCTAGTGTGCTCTTCCAAGAACTTGACAAGGACAGAAAGCGGGCCCA
GCTGATCCTGCAGTACATCCCACATGTCATTCCTCACAAAAACAGAGTTCTCCTGTTCCG
AAACATGGTGACCAAGGAGAAGGAGAAACTGGGGCTTGTGGAAACCAGCTCCGCCTCGCC
TCATGTCACACACATTACCATCCGCCGGTCCCGGATGTTGGAGGACGGCTACGAACAGCT
CCGGCAGCTCTCCCAGCACGCCATGAAGGGCGTCATCCGCGTGAAGTTTGTCAATGACCT
TGGGGTGGACGAGGCGGGGATTGATCAAGACGGCGTTTTCAAGGAGTTCTTGGAAGAGAT
CATCAAGAGGGTGTTCGACCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAGTGCGAAATATCCTCAGGCCCGTCGGGGGTAAACGTGTGGATTCTGCAGAGGTACA
GAAGGTCTGCAACATCTGCGTCCTCTACCAGACCTCGCTGACGACACTAACCCAGATCCG
GCTGCAGATACTCACAGGTCTCACTTACCTTGATGACCTGCTGCCCAAACTGTGGGCCTT
TATCTGTGAGCTGGGGCCCCACGGAGGGTTAAAGCTCTTCTTGGAATGCCTCAACAATGA
CACTGAAGAGTCTAAGCAGCTCTTGGCCATGCTGATGCTGTTCTGTGACTGTTCCCGGCA
CCTCATCACGATCCTTGATGACATTGAAGTATATGAAGAACAGATTTCATTCAAACTGGA
AGAGCTGGTCACCATCTCCTCTTTTCTGAATTCCTTTGTCTTTAAGATGATCTGGGATGG
AATTGTAGAGAATGCCAAGGGCGAGACCCTGGAGCTGTTCCATTCTGTTCACGGGTGGCT
GATGGTGCTCTACGAGCGGGACTGCCGGCGGCGCTTCGCCCCCGAGGACCACTGGCTGCG
GAAGGATCTCAAGCCTAGTGTGCTCTTCCAAGAACTTGACAAGGACAGAAAGCGGGCCCA
GCTGATCCTGCAGTACATCCCACATGTCATTCCTCACAAAAACAGAGTTCTCCTGTTCCG
AAACATGGTGACCAAGGAGAAGGAGAAACTGGGGCTTGTGGAAACCAGCTCCGCCTCGCC
TCATGTCACACACATTACCATCCGCCGGTCCCGGATGTTGGAGGACGGCTACGAACAGCT
CCGGCAGCTCTCCCAGCACGCCATGAAGGGCGTCATCCGCGTGAAGTTTGTCAATGACCT
TGGGGTGGACGAGGCGGGGATTGATCAAGACGGCGTTTTCAAGGAGTTCTTGGAAGAGAT
CATCAAGAGGGTGTTCGACCCAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               135-238, - strand, RNAz p=0.96367

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               135-238, - strand, RNAz p=0.96367

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               135-310, gnl|bosTau2|chr17 (35621441-35621616)
               

               
               135-310, gnl|canFam2|chr26 (20596987-20596789)
               

               
               135-310, gnl|danRer3|chr5 (9635846-9636039)
               

               
               135-310, gnl|echTel1|scaffold_294731 (18164-18367)
               

               
               135-310, gnl|fr1|chrUn (1686480-1686669)
               

               
               135-310, gnl|galGal2|chrUn (140578222-140578024)
               

               
               135-310, gnl|hg17|chr12 (108408071-108408270)
               

               
               135-310, gnl|Hg17|chr12 (108408085-108408261)
               

               
               135-310, gnl|loxAfr1|scaffold_14958 (50482-50284)
               

               
               135-310, gnl|mm7|chr5 (113626301-113626497)
               

               
               135-310, gnl|Mm7|chr5 (113626313-113626488)
               

               
               135-310, gnl|monDom2|scaffold_192 (960818-960621)
               

               
               135-310, gnl|panTro1|chr10 (110975684-110975883)
               

               
               135-310, gnl|rheMac2|chr11 (110508855-110509054)
               

               
               135-310, gnl|tetNig1|chr12 (6281434-6281631)
               

               
               135-310, gnl|xenTro1|scaffold_9 (123120-123306)
               


               
               759-924, gnl|bosTau2|chr17 (35631077-35631242)
               

               
               759-924, gnl|Hg17|chr12 (108421667-108421833)
               

               
               759-924, gnl|Mm7|chr5 (113632790-113632955)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-310, gnl|bosTau2|chr17 (35621441-35621616)
               

               
               135-310, gnl|canFam2|chr26 (20596987-20596789)
               

               
               135-310, gnl|danRer3|chr5 (9635846-9636039)
               

               
               135-310, gnl|echTel1|scaffold_294731 (18164-18367)
               

               
               135-310, gnl|fr1|chrUn (1686480-1686669)
               

               
               135-310, gnl|galGal2|chrUn (140578222-140578024)
               

               
               135-310, gnl|hg17|chr12 (108408071-108408270)
               

               
               135-310, gnl|Hg17|chr12 (108408085-108408261)
               

               
               135-310, gnl|loxAfr1|scaffold_14958 (50482-50284)
               

               
               135-310, gnl|mm7|chr5 (113626301-113626497)
               

               
               135-310, gnl|Mm7|chr5 (113626313-113626488)
               

               
               135-310, gnl|monDom2|scaffold_192 (960818-960621)
               

               
               135-310, gnl|panTro1|chr10 (110975684-110975883)
               

               
               135-310, gnl|rheMac2|chr11 (110508855-110509054)
               

               
               135-310, gnl|tetNig1|chr12 (6281434-6281631)
               

               
               135-310, gnl|xenTro1|scaffold_9 (123120-123306)
               


               
               759-924, gnl|bosTau2|chr17 (35631077-35631242)
               

               
               759-924, gnl|Hg17|chr12 (108421667-108421833)
               

               
               759-924, gnl|Mm7|chr5 (113632790-113632955)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	135-310, gnl\|bosTau2\|chr17 (35621441-35621616)
	135-310, gnl\|canFam2\|chr26 (20596987-20596789)
	135-310, gnl\|danRer3\|chr5 (9635846-9636039)
	135-310, gnl\|echTel1\|scaffold_294731 (18164-18367)
	135-310, gnl\|fr1\|chrUn (1686480-1686669)
	135-310, gnl\|galGal2\|chrUn (140578222-140578024)
	135-310, gnl\|hg17\|chr12 (108408071-108408270)
	135-310, gnl\|Hg17\|chr12 (108408085-108408261)
	135-310, gnl\|loxAfr1\|scaffold_14958 (50482-50284)
	135-310, gnl\|mm7\|chr5 (113626301-113626497)
	135-310, gnl\|Mm7\|chr5 (113626313-113626488)
	135-310, gnl\|monDom2\|scaffold_192 (960818-960621)
	135-310, gnl\|panTro1\|chr10 (110975684-110975883)
	135-310, gnl\|rheMac2\|chr11 (110508855-110509054)
	135-310, gnl\|tetNig1\|chr12 (6281434-6281631)
	135-310, gnl\|xenTro1\|scaffold_9 (123120-123306)

	759-924, gnl\|bosTau2\|chr17 (35631077-35631242)
	759-924, gnl\|Hg17\|chr12 (108421667-108421833)
	759-924, gnl\|Mm7\|chr5 (113632790-113632955)