Non-Coding RNA Search

Ss1.1-Pig1-69G11.5

Sequence:


               
               CATGGATATTAGTCGGGTTCGTTACTGCTGAGCCACACCGGGAACTCCAGTCCTTTCATT
TTAGACCTTTGTAATGCTCATTAGTATTAAGTAAAGGCTCTGAGCCATCTGCAACTCTCC
TTGGAATTCTAATAGCCTAGTACCTTAATGGTCACCAAAACATACTTTAAAAAACAAAGT
CCTCTTATACATTACAATTTGTTTTCTGCAGCAACATGAAGAAGAAGAAGGCAAAAGGAG
CTAAGGATGACTCGGAAGACGAAGATTCAGAAGACGATGACCTTGATAACTTGGATGATG
ATGAAGTTTCTTTAGGAAGTATGAATGAAGAATTTGCTGAACTTGAGGAAGATGGAGGAA
CATTCATGGATGTGTTGGAGGATGAAAACGAGGGCATTCCAGGTAAATACTTAATTTTTG
CTGTTCAGCCATTTTTCTTGATCTTGCTCTCTGATTCCGTACATCCCAGACTGTTCAATG
GATTTGTAATAAACTTCCAAGATGAAGGGAAACTTCTTGCTCATTGTTTGCCTGAAATCT
TGGCTTGTGTTCATCTTTTTAAACAAAAAATATGCTCCAAAAATGCCCACAAGTTCAGCT
ACTAAAACTCCTTTAAAGATCTTCTTTGCCAGTGGTTCCATAGTCCGGGCCATCCTGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGATATTAGTCGGGTTCGTTACTGCTGAGCCACACCGGGAACTCCAGTCCTTTCATT
TTAGACCTTTGTAATGCTCATTAGTATTAAGTAAAGGCTCTGAGCCATCTGCAACTCTCC
TTGGAATTCTAATAGCCTAGTACCTTAATGGTCACCAAAACATACTTTAAAAAACAAAGT
CCTCTTATACATTACAATTTGTTTTCTGCAGCAACATGAAGAAGAAGAAGGCAAAAGGAG
CTAAGGATGACTCGGAAGACGAAGATTCAGAAGACGATGACCTTGATAACTTGGATGATG
ATGAAGTTTCTTTAGGAAGTATGAATGAAGAATTTGCTGAACTTGAGGAAGATGGAGGAA
CATTCATGGATGTGTTGGAGGATGAAAACGAGGGCATTCCAGGTAAATACTTAATTTTTG
CTGTTCAGCCATTTTTCTTGATCTTGCTCTCTGATTCCGTACATCCCAGACTGTTCAATG
GATTTGTAATAAACTTCCAAGATGAAGGGAAACTTCTTGCTCATTGTTTGCCTGAAATCT
TGGCTTGTGTTCATCTTTTTAAACAAAAAATATGCTCCAAAAATGCCCACAAGTTCAGCT
ACTAAAACTCCTTTAAAGATCTTCTTTGCCAGTGGTTCCATAGTCCGGGCCATCCTGAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26380023|dbj|BAC25024.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26380023|dbj|BAC25024.1|

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               49-414, gnl|bosTau2|chr11 (18802443-18802071)
               

               
               49-414, gnl|Hg17|chr2 (37351000-37350614)
               


               
               539-659, gnl|bosTau2|chr11 (18795864-18795744)
               

               
               539-659, gnl|Hg17|chr2 (37338613-37338493)
               

               
               539-659, gnl|Mm7|chr17 (77219026-77218906)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-414, gnl|bosTau2|chr11 (18802443-18802071)
               

               
               49-414, gnl|Hg17|chr2 (37351000-37350614)
               


               
               539-659, gnl|bosTau2|chr11 (18795864-18795744)
               

               
               539-659, gnl|Hg17|chr2 (37338613-37338493)
               

               
               539-659, gnl|Mm7|chr17 (77219026-77218906)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               lun (0.150489)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               med (0.116252)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               hea (0.204499)
               

               
               lun (0.150489)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               med (0.116252)

	49-414, gnl\|bosTau2\|chr11 (18802443-18802071)
	49-414, gnl\|Hg17\|chr2 (37351000-37350614)

	539-659, gnl\|bosTau2\|chr11 (18795864-18795744)
	539-659, gnl\|Hg17\|chr2 (37338613-37338493)
	539-659, gnl\|Mm7\|chr17 (77219026-77218906)

	cty (0.20816)
	hea (0.204499)
	lun (0.150489)
	ssp (0.13552)
	ova (0.129132)
	med (0.116252)