Non-Coding RNA Search

Ss1.1-Pig1-69G23.5

Sequence:


               
               TGCCGAGTTTCAGTACCTGCAGCCGGGACCCCCAAGGCGGCTCCAGACTGTGGTGGTGTA
CCTGCCGGATGTCTGGACCATCATGCCTACTTTAGAAGAGTGGGAGGCCCTGTGCCAGCA
GAAAGTTGCAGAGACAGCTCCCCCACCCCAGGAGGTGCCAGCGGAAACAGAGCCTACAGA
ACAGGCGGCTGATGCATCAGAGCAAGCAGCAGACACCTCTAAACAGAATGCAGAGAATCC
AGAGGTCACTGCACAGCAGGAAATGGACTCTGATCTCCCAGAGGCCCCTCCACCCCCTCT
AGAGCCTGCTGTCGTGGCACGCCCTGGTTGTGTAAACCTGTCCCTCCATGGTATCCTGGA
GGACCGGAGGCCAAAAGAAAGGCTCTCTTTTGAGGTGATGGTGTTGGCTGAGCTATTTCT
GGAGATGCTGCAGAGGGATTTTGGCTATAGGATTTATAAGATGCTACTGAGCCTTCCTGA
AAAGGTTGTGGCCCCACCTGAAACCGAGAAGGAGGAGGCAGCCAAGGAGGAAGAAGTGGT
CAAGGAGGAGGCCAAGGAGTCCAAGGATGAGGTACAGAGTGAGGGCACAGCTGCCGAGTC
AGACGCCCCTCCGGTGAGTACCTCCCCCTGCACCCCGCTCGGGCACCAGGGCTGGGGGGC
GTGTAGGAACACTGGACAGAAGGGAGCGCTGCGTGGTGGCGCCGCTGTTCTGAGCGCTTT
GTGGGTCTCACTGCCCCTTGCTCACTGCTCGCACCTTGTGACCCAAACGTAGGGCCCTCT
TTACTCTGCCACGTGGTCACGCAGCCCCTAAGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCGAGTTTCAGTACCTGCAGCCGGGACCCCCAAGGCGGCTCCAGACTGTGGTGGTGTA
CCTGCCGGATGTCTGGACCATCATGCCTACTTTAGAAGAGTGGGAGGCCCTGTGCCAGCA
GAAAGTTGCAGAGACAGCTCCCCCACCCCAGGAGGTGCCAGCGGAAACAGAGCCTACAGA
ACAGGCGGCTGATGCATCAGAGCAAGCAGCAGACACCTCTAAACAGAATGCAGAGAATCC
AGAGGTCACTGCACAGCAGGAAATGGACTCTGATCTCCCAGAGGCCCCTCCACCCCCTCT
AGAGCCTGCTGTCGTGGCACGCCCTGGTTGTGTAAACCTGTCCCTCCATGGTATCCTGGA
GGACCGGAGGCCAAAAGAAAGGCTCTCTTTTGAGGTGATGGTGTTGGCTGAGCTATTTCT
GGAGATGCTGCAGAGGGATTTTGGCTATAGGATTTATAAGATGCTACTGAGCCTTCCTGA
AAAGGTTGTGGCCCCACCTGAAACCGAGAAGGAGGAGGCAGCCAAGGAGGAAGAAGTGGT
CAAGGAGGAGGCCAAGGAGTCCAAGGATGAGGTACAGAGTGAGGGCACAGCTGCCGAGTC
AGACGCCCCTCCGGTGAGTACCTCCCCCTGCACCCCGCTCGGGCACCAGGGCTGGGGGGC
GTGTAGGAACACTGGACAGAAGGGAGCGCTGCGTGGTGGCGCCGCTGTTCTGAGCGCTTT
GTGGGTCTCACTGCCCCTTGCTCACTGCTCGCACCTTGTGACCCAAACGTAGGGCCCTCT
TTACTCTGCCACGTGGTCACGCAGCCCCTAAGTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N8M1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N8M1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               50-164, - strand, RNAz p=0.594041

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-164, - strand, RNAz p=0.594041

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-164, gnl|bosTau2|chr8 (30930643-30930480)
               

               
               1-164, gnl|canFam2|chr25 (37654083-37653917)
               

               
               1-164, gnl|danRer3|chr13 (16236244-16236423)
               

               
               1-164, gnl|dasNov1|scaffold_12149 (17116-17283)
               

               
               1-164, gnl|echTel1|scaffold_297672 (12926-13085)
               

               
               1-164, gnl|fr1|chrUn (165407954-165407775)
               

               
               1-164, gnl|hg17|chr8 (22528865-22529031)
               

               
               1-164, gnl|Hg17|chr8 (22528892-22529055)
               

               
               1-164, gnl|loxAfr1|scaffold_1644 (23552-23386)
               

               
               1-164, gnl|mm7|chr14 (64787035-64786869)
               

               
               1-164, gnl|Mm7|chr14 (64787006-64786843)
               

               
               1-164, gnl|monDom2|scaffold_1 (72836247-72836081)
               

               
               1-164, gnl|oryCun1|scaffold_149348 (15026-15192)
               

               
               1-164, gnl|panTro1|chr7 (23465172-23465338)
               

               
               1-164, gnl|rheMac2|chr8 (22565189-22565355)
               

               
               1-164, gnl|rn3|chr15 (50559616-50559450)
               

               
               1-164, gnl|tetNig1|chr17 (5501025-5501204)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-164, gnl|bosTau2|chr8 (30930643-30930480)
               

               
               1-164, gnl|canFam2|chr25 (37654083-37653917)
               

               
               1-164, gnl|danRer3|chr13 (16236244-16236423)
               

               
               1-164, gnl|dasNov1|scaffold_12149 (17116-17283)
               

               
               1-164, gnl|echTel1|scaffold_297672 (12926-13085)
               

               
               1-164, gnl|fr1|chrUn (165407954-165407775)
               

               
               1-164, gnl|hg17|chr8 (22528865-22529031)
               

               
               1-164, gnl|Hg17|chr8 (22528892-22529055)
               

               
               1-164, gnl|loxAfr1|scaffold_1644 (23552-23386)
               

               
               1-164, gnl|mm7|chr14 (64787035-64786869)
               

               
               1-164, gnl|Mm7|chr14 (64787006-64786843)
               

               
               1-164, gnl|monDom2|scaffold_1 (72836247-72836081)
               

               
               1-164, gnl|oryCun1|scaffold_149348 (15026-15192)
               

               
               1-164, gnl|panTro1|chr7 (23465172-23465338)
               

               
               1-164, gnl|rheMac2|chr8 (22565189-22565355)
               

               
               1-164, gnl|rn3|chr15 (50559616-50559450)
               

               
               1-164, gnl|tetNig1|chr17 (5501025-5501204)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	1-164, gnl\|bosTau2\|chr8 (30930643-30930480)
	1-164, gnl\|canFam2\|chr25 (37654083-37653917)
	1-164, gnl\|danRer3\|chr13 (16236244-16236423)
	1-164, gnl\|dasNov1\|scaffold_12149 (17116-17283)
	1-164, gnl\|echTel1\|scaffold_297672 (12926-13085)
	1-164, gnl\|fr1\|chrUn (165407954-165407775)
	1-164, gnl\|hg17\|chr8 (22528865-22529031)
	1-164, gnl\|Hg17\|chr8 (22528892-22529055)
	1-164, gnl\|loxAfr1\|scaffold_1644 (23552-23386)
	1-164, gnl\|mm7\|chr14 (64787035-64786869)
	1-164, gnl\|Mm7\|chr14 (64787006-64786843)
	1-164, gnl\|monDom2\|scaffold_1 (72836247-72836081)
	1-164, gnl\|oryCun1\|scaffold_149348 (15026-15192)
	1-164, gnl\|panTro1\|chr7 (23465172-23465338)
	1-164, gnl\|rheMac2\|chr8 (22565189-22565355)
	1-164, gnl\|rn3\|chr15 (50559616-50559450)
	1-164, gnl\|tetNig1\|chr17 (5501025-5501204)