Non-Coding RNA Search

Ss1.1-Pig1-69I02.5

Sequence:


               
               CCATATTCATTGAGCTTTTAAAAAGATCACAACCTCAAAATGGTTAAAATCCATTGACAT
TTGCACTTTCAGACATGACAAGTCTCGGAGCTGCTGAGATGACTGGCCCCTGGCCGTTCC
TCTTATGTCTCCTTTCTTTCTGTCCCGTCCTCCTCTCCGGTAACCTGGGTCTGGAGTTAC
TTTCATAGCATTTCTCAACTCTTGGCTTGTTTTTTCCCTGATGGTCAAGTCTCTTTATGT
TTCAATATTTTTTAACTGAGGTGTCTTAAAACAAATGACCCTTAGGTCTAAAGTAAGGAA
AAAAAGCAAAAACTAAATATTATTTTTATACTACAACTTGAGTCTATTGCCAAAATCTGG
AAATCCCTCCCATGCCCAGTGAGTTTACATCCCAGAAACATTGAGCCATCAGAAGGAACT
CTTGACCTGACCTGTTCTTTGGCCTGGCTAGGTAGGTGGTGGTTATTTCCCCAAGGTGGG
GCTTGGGCTCCACCCTTCCTCTGTGCAGATAATATCTTTTTCTGGCTGCAGGCTCCCTCT
TCTGCACTGCCCTGCACTCTTTTCCTGCAAGTGCATCTACCCTTCCTCTGGGCTGTCCTC
GTGACACTTTGGTTCATCCTAGATTTCAGCGTGTCCTGTGGATAGACTGGGGATTTTGCT
GTTCCCTATTGCTTCTGTTTACACAAATGAATTTTTTCTGGTTTCCCATTAGGGCATGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATATTCATTGAGCTTTTAAAAAGATCACAACCTCAAAATGGTTAAAATCCATTGACAT
TTGCACTTTCAGACATGACAAGTCTCGGAGCTGCTGAGATGACTGGCCCCTGGCCGTTCC
TCTTATGTCTCCTTTCTTTCTGTCCCGTCCTCCTCTCCGGTAACCTGGGTCTGGAGTTAC
TTTCATAGCATTTCTCAACTCTTGGCTTGTTTTTTCCCTGATGGTCAAGTCTCTTTATGT
TTCAATATTTTTTAACTGAGGTGTCTTAAAACAAATGACCCTTAGGTCTAAAGTAAGGAA
AAAAAGCAAAAACTAAATATTATTTTTATACTACAACTTGAGTCTATTGCCAAAATCTGG
AAATCCCTCCCATGCCCAGTGAGTTTACATCCCAGAAACATTGAGCCATCAGAAGGAACT
CTTGACCTGACCTGTTCTTTGGCCTGGCTAGGTAGGTGGTGGTTATTTCCCCAAGGTGGG
GCTTGGGCTCCACCCTTCCTCTGTGCAGATAATATCTTTTTCTGGCTGCAGGCTCCCTCT
TCTGCACTGCCCTGCACTCTTTTCCTGCAAGTGCATCTACCCTTCCTCTGGGCTGTCCTC
GTGACACTTTGGTTCATCCTAGATTTCAGCGTGTCCTGTGGATAGACTGGGGATTTTGCT
GTTCCCTATTGCTTCTGTTTACACAAATGAATTTTTTCTGGTTTCCCATTAGGGCATGTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               38-156, - strand, RNAz p=0.518504
               

               
               457-576, + strand, RNAz p=0.875776

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-156, - strand, RNAz p=0.518504
               

               
               457-576, + strand, RNAz p=0.875776

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_012199, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012199, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr3 (76958158-76957440)
               

               
               1-720, gnl|Hg17|chr1 (36055237-36055961)
               

               
               1-720, gnl|Mm7|chr4 (125883247-125882538)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr3 (76958158-76957440)
               

               
               1-720, gnl|Hg17|chr1 (36055237-36055961)
               

               
               1-720, gnl|Mm7|chr4 (125883247-125882538)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               cty (0.10408)

	38-156, - strand, RNAz p=0.518504
	457-576, + strand, RNAz p=0.875776

	1-720, gnl\|bosTau2\|chr3 (76958158-76957440)
	1-720, gnl\|Hg17\|chr1 (36055237-36055961)
	1-720, gnl\|Mm7\|chr4 (125883247-125882538)