Non-Coding RNA Search

Ss1.1-Pig1-69J13.5

Sequence:


               
               AGAAGTCAGGTTTCTAGCCCCTCTATCGCTACCTCCAGTGCCAACCGCCAGCTGGTGATG
CTGGAAGGGAAGTCAGGACTCTACTTTTCCTCTCTGGACTCGAGCATTGACCTCTTGAAG
AAGAGAGCCCAGGAGTTGATTGAAAACATCAACGAGAGCAGACAGAAGGACCATGCACTC
ATGACCAACTTCAGAGACAGCCTCAAGATCAAGGTTTCAGACCTGACAGAGAAGCTAGAG
GAGAAGATGTATCAAATTTATAATTACCACAACAAGATCATTCAGGAAAAGCTTCAAGAG
TTCACTCAGAAAATGGCGAAGATCAGTCATCTGGAAACAGAGCTCAAGCAAGTGTGCCAC
ACTGTGGAGACTGTGTACAAAGACCTGTGCATCCAGCCTGAGGTAAGACTAAACTCACGT
ACATGGGCGCCACTGGAGGAAGGAGAGTTGTAGCAGCTAAGATGAAAGTAAATGTCAACA
GAAAGCAAGGATTGCCAGGCCCTAAATCCCACAGAACCCACAATCACTGTAAAACCCTTG
GTGGAGTTCCCTGGTGGCCTAGTGGTTAAGGATCTGGTGTTGTCATTGCTGTGGCTCGGG
TCACTGCTATGGCATGAGTTCATTCCCTGGCCCAGGAACTTATGCATGCTTTAGGCATAA
CCAAAAAAACAAACAACAAAAACAAAAACAGGGGGTTCCCTTGTGGCTCAGCAGGTTAAG
AATCCAACTAGTATCCATGAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGTCAGGTTTCTAGCCCCTCTATCGCTACCTCCAGTGCCAACCGCCAGCTGGTGATG
CTGGAAGGGAAGTCAGGACTCTACTTTTCCTCTCTGGACTCGAGCATTGACCTCTTGAAG
AAGAGAGCCCAGGAGTTGATTGAAAACATCAACGAGAGCAGACAGAAGGACCATGCACTC
ATGACCAACTTCAGAGACAGCCTCAAGATCAAGGTTTCAGACCTGACAGAGAAGCTAGAG
GAGAAGATGTATCAAATTTATAATTACCACAACAAGATCATTCAGGAAAAGCTTCAAGAG
TTCACTCAGAAAATGGCGAAGATCAGTCATCTGGAAACAGAGCTCAAGCAAGTGTGCCAC
ACTGTGGAGACTGTGTACAAAGACCTGTGCATCCAGCCTGAGGTAAGACTAAACTCACGT
ACATGGGCGCCACTGGAGGAAGGAGAGTTGTAGCAGCTAAGATGAAAGTAAATGTCAACA
GAAAGCAAGGATTGCCAGGCCCTAAATCCCACAGAACCCACAATCACTGTAAAACCCTTG
GTGGAGTTCCCTGGTGGCCTAGTGGTTAAGGATCTGGTGTTGTCATTGCTGTGGCTCGGG
TCACTGCTATGGCATGAGTTCATTCCCTGGCCCAGGAACTTATGCATGCTTTAGGCATAA
CCAAAAAAACAAACAACAAAAACAAAAACAGGGGGTTCCCTTGTGGCTCAGCAGGTTAAG
AATCCAACTAGTATCCATGAGGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61874328|ref|XP_587931.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61874328|ref|XP_587931.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-215, gnl|bosTau2|chr7 (8594613-8594399)
               

               
               1-215, gnl|Hg17|chr19 (12876518-12876304)
               

               
               1-215, gnl|Mm7|chr8 (83469505-83469696)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-215, gnl|bosTau2|chr7 (8594613-8594399)
               

               
               1-215, gnl|Hg17|chr19 (12876518-12876304)
               

               
               1-215, gnl|Mm7|chr8 (83469505-83469696)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               hea (0.408998)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.408998)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	1-215, gnl\|bosTau2\|chr7 (8594613-8594399)
	1-215, gnl\|Hg17\|chr19 (12876518-12876304)
	1-215, gnl\|Mm7\|chr8 (83469505-83469696)

	hea (0.408998)
	fcc (0.197785)
	nep (0.183925)
	sug (0.127291)
	ese (0.126502)
	ldo (0.0970026)