Non-Coding RNA Search

Ss1.1-Pig1-69P06.5

Sequence:


               
               GCTTGGAAATCAGCGTGGCTGTCCCCTCCAGGCCAGGGGAGGTTGGAGCAACCCCCCAGG
AGAGGGGCACTAGGTGGCATTGTGCCCAATGTCTGGCTCCCCTGTGGGAGGGAGGCCCCC
CAGGTGGGACAGGGCTGGCAGGAGCCGGCTGCCTCGGCCCACGTGCCCTGCCGGCCAGGG
CGTGGGCTCCCCTAGGCTGTGGTGCCCCTCTGGCCTCCCACGTCCACGTCCTTTCAATTG
GCCATTTGGTTCTTGCCCTTGGCCCTCTTGGGCAGACAGAGCAGGCTCAGGCCATTGACA
TCGCAGTTCTTCCTATCAGCGTCAGTGACCCAGGGTCTGAACTGCCCCAGCCTTCCAGGG
AAACCCGGGGCAGACAGGCCTGGTGGGGGGGTTGGGAAACCTCCTTCCGCCTGAGCTTCC
TTGAGGGGACCCAGGAGCCCTTGGGTCCTGGTCTCTAAGCTTTCGTGTCGTGTTGCAGCA
GAGTGACAATGGGGGTTGGGGGGTTATTTATTTTTGCCTGTCCTTAATCCCTGCTTGGAC
ACCTGAGCATCAGGTCCCTGTGCCCCTGGTGCCATCTGGCCTGGCTGGAGCCAGGAACCA
GAGGGACGCTTTCCCAGAATCCGCATGTTTCCCTAGTAACTGCACCCCATCACCATCCTG
GTGCCTGGCTTTTAACTCCCACCCCTGCCTATGATTCCGCTGCAGAGAGACGCGACTGGC
GGCTCCAGCGGGGACTACCTTTCTTATGAATCCAGGGGACCCTCCCCCAACCCCTTGCTG
CCCTCTCCTCTCCCCTCCCCTCCCCCAGTGCGTTCTCTGGTCGCCAAGTTCAAAGCTGTG
CACATGTGGACACTCAATAAATGTTCATTGGTGACAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTGGAAATCAGCGTGGCTGTCCCCTCCAGGCCAGGGGAGGTTGGAGCAACCCCCCAGG
AGAGGGGCACTAGGTGGCATTGTGCCCAATGTCTGGCTCCCCTGTGGGAGGGAGGCCCCC
CAGGTGGGACAGGGCTGGCAGGAGCCGGCTGCCTCGGCCCACGTGCCCTGCCGGCCAGGG
CGTGGGCTCCCCTAGGCTGTGGTGCCCCTCTGGCCTCCCACGTCCACGTCCTTTCAATTG
GCCATTTGGTTCTTGCCCTTGGCCCTCTTGGGCAGACAGAGCAGGCTCAGGCCATTGACA
TCGCAGTTCTTCCTATCAGCGTCAGTGACCCAGGGTCTGAACTGCCCCAGCCTTCCAGGG
AAACCCGGGGCAGACAGGCCTGGTGGGGGGGTTGGGAAACCTCCTTCCGCCTGAGCTTCC
TTGAGGGGACCCAGGAGCCCTTGGGTCCTGGTCTCTAAGCTTTCGTGTCGTGTTGCAGCA
GAGTGACAATGGGGGTTGGGGGGTTATTTATTTTTGCCTGTCCTTAATCCCTGCTTGGAC
ACCTGAGCATCAGGTCCCTGTGCCCCTGGTGCCATCTGGCCTGGCTGGAGCCAGGAACCA
GAGGGACGCTTTCCCAGAATCCGCATGTTTCCCTAGTAACTGCACCCCATCACCATCCTG
GTGCCTGGCTTTTAACTCCCACCCCTGCCTATGATTCCGCTGCAGAGAGACGCGACTGGC
GGCTCCAGCGGGGACTACCTTTCTTATGAATCCAGGGGACCCTCCCCCAACCCCTTGCTG
CCCTCTCCTCTCCCCTCCCCTCCCCCAGTGCGTTCTCTGGTCGCCAAGTTCAAAGCTGTG
CACATGTGGACACTCAATAAATGTTCATTGGTGACAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               2-158, + strand, RNAz p=0.697954
               

               
               232-469, - strand, RNAz p=0.963561
               

               
               510-628, - strand, RNAz p=0.552392
               

               
               669-869, - strand, RNAz p=0.901756

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-158, + strand, RNAz p=0.697954
               

               
               232-469, - strand, RNAz p=0.963561
               

               
               510-628, - strand, RNAz p=0.552392
               

               
               669-869, - strand, RNAz p=0.901756

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001014841, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001014841, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-879, gnl|bosTau2|chr3 (77310065-77309199)
               

               
               2-879, gnl|Hg17|chr1 (35700574-35701472)
               

               
               2-879, gnl|Mm7|chr4 (126189276-126188403)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-879, gnl|bosTau2|chr3 (77310065-77309199)
               

               
               2-879, gnl|Hg17|chr1 (35700574-35701472)
               

               
               2-879, gnl|Mm7|chr4 (126189276-126188403)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ece (0.687916)
               

               
               fhi (0.508733)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.687916)
               

               
               fhi (0.508733)
               

               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)

	2-158, + strand, RNAz p=0.697954
	232-469, - strand, RNAz p=0.963561
	510-628, - strand, RNAz p=0.552392
	669-869, - strand, RNAz p=0.901756

	2-879, gnl\|bosTau2\|chr3 (77310065-77309199)
	2-879, gnl\|Hg17\|chr1 (35700574-35701472)
	2-879, gnl\|Mm7\|chr4 (126189276-126188403)

	ece (0.687916)
	fhi (0.508733)
	fce (0.271592)
	fcc (0.197785)
	csp (0.161186)
	hyp (0.142837)
	cov (0.132153)
	cly (0.120642)