Non-Coding RNA Search

Ss1.1-Pig1-69P24.5

Sequence:


               
               AGGAAGACCTGCAGCAGGAGGGGACACTCCTCGGCCAGTTCACCTATGACCAGGATGGGG
AGCCCATTCAGACGTTTTATTTTCAGAACCCCAAAATGGCCACGTACCAGGTGGTGGAGC
TGCGGATCCTGACTAACTGGGGCCACCCCGAGTACACCTGCATCTACCGCTTCAGGGTGC
ACGGGGAACCTGCCCACTAGGCCTCCTCGGTGCTGCCTCCAGGCAGCGGGGGGGCCAGCT
CCTCTGGCCTGTGCCCCCTTCTCTGGGGGTAGGTGAGCAGCACCTCTGCCACTTTCCCCA
CACGCTTGACGCGCGCTGACTTCCAGGAGCAAGAAAGAGCCCCAGGCCCAGCGGAGATGA
GAAAGAACATGCAGGCTTTCCTGAGCGGCGGGCGGCGGGCTCCAGCGGCTCCTTTCAGTC
TTTGCTCTGTGCCTGCCAGGACCGGGCGTCTACTCCTCCCTCCTGGAGGGTGTATATATG
TAGCATGTTGTGGGGAATTGAAGCAGGGAGAGAAGGGTGAGTGCGTGTGTTCCAGCAAAG
GCGGCTGAGACCTGCCTGCCCCTTGCCCCTGGGAGAGGGGCTGGCACCTAGGGAGCTGCA
CAAATGAAGCAGGTGCCAAAGCCGTGGGTGAAAAAGGCCAGGGCCTGAGGCAGCTGAACT
GTCCCCCTCCCGAGGCAGGGAAGGGAGGCCTCCTGGGAGGAGGGTACTCAGGGTGCAAAC
TGGGACTAGTCCCCAGACAGGATGAGAGGGCCGCTGGGCTCCTCCAGAAAGCTAGTGCCA
TCAGTCTAGGGGAGGGTGGCCCACAGGGTTCCTGAAAGGCTCCTACACACTGTTTGTCCT
GGGTCAGAGTGGGTCATGGGGCCTCTTGTGCTCCAGAAGGTCTGGCTCCTGTGAGCCTCT
GGGGTGCTGTAGGATTCTCCTCGGCTGGGTAGTTGCTTTCTCTCCTGATGCTGGGCCTGC
CTGTGCCCCACAGCAAGCTTGCCACCTTTCCCCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAGACCTGCAGCAGGAGGGGACACTCCTCGGCCAGTTCACCTATGACCAGGATGGGG
AGCCCATTCAGACGTTTTATTTTCAGAACCCCAAAATGGCCACGTACCAGGTGGTGGAGC
TGCGGATCCTGACTAACTGGGGCCACCCCGAGTACACCTGCATCTACCGCTTCAGGGTGC
ACGGGGAACCTGCCCACTAGGCCTCCTCGGTGCTGCCTCCAGGCAGCGGGGGGGCCAGCT
CCTCTGGCCTGTGCCCCCTTCTCTGGGGGTAGGTGAGCAGCACCTCTGCCACTTTCCCCA
CACGCTTGACGCGCGCTGACTTCCAGGAGCAAGAAAGAGCCCCAGGCCCAGCGGAGATGA
GAAAGAACATGCAGGCTTTCCTGAGCGGCGGGCGGCGGGCTCCAGCGGCTCCTTTCAGTC
TTTGCTCTGTGCCTGCCAGGACCGGGCGTCTACTCCTCCCTCCTGGAGGGTGTATATATG
TAGCATGTTGTGGGGAATTGAAGCAGGGAGAGAAGGGTGAGTGCGTGTGTTCCAGCAAAG
GCGGCTGAGACCTGCCTGCCCCTTGCCCCTGGGAGAGGGGCTGGCACCTAGGGAGCTGCA
CAAATGAAGCAGGTGCCAAAGCCGTGGGTGAAAAAGGCCAGGGCCTGAGGCAGCTGAACT
GTCCCCCTCCCGAGGCAGGGAAGGGAGGCCTCCTGGGAGGAGGGTACTCAGGGTGCAAAC
TGGGACTAGTCCCCAGACAGGATGAGAGGGCCGCTGGGCTCCTCCAGAAAGCTAGTGCCA
TCAGTCTAGGGGAGGGTGGCCCACAGGGTTCCTGAAAGGCTCCTACACACTGTTTGTCCT
GGGTCAGAGTGGGTCATGGGGCCTCTTGTGCTCCAGAAGGTCTGGCTCCTGTGAGCCTCT
GGGGTGCTGTAGGATTCTCCTCGGCTGGGTAGTTGCTTTCTCTCCTGATGCTGGGCCTGC
CTGTGCCCCACAGCAAGCTTGCCACCTTTCCCCAGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|26348379|dbj|BAC37829.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|26348379|dbj|BAC37829.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               536-934, + strand, RNAz p=0.999861

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               536-934, + strand, RNAz p=0.999861

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC094797, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC094797, +

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               84-225, gnl|bosTau2|chr5 (69308866-69309007)
               

               
               84-225, gnl|Hg17|chr22 (37456888-37456743)
               

               
               84-225, gnl|Mm7|chr15 (79809694-79809548)
               


               
               238-958, gnl|bosTau2|chr5 (69308994-69309695)
               

               
               238-958, gnl|Hg17|chr22 (37456760-37456034)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-225, gnl|bosTau2|chr5 (69308866-69309007)
               

               
               84-225, gnl|Hg17|chr22 (37456888-37456743)
               

               
               84-225, gnl|Mm7|chr15 (79809694-79809548)
               


               
               238-958, gnl|bosTau2|chr5 (69308994-69309695)
               

               
               238-958, gnl|Hg17|chr22 (37456760-37456034)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               eep (0.122564)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	84-225, gnl\|bosTau2\|chr5 (69308866-69309007)
	84-225, gnl\|Hg17\|chr22 (37456888-37456743)
	84-225, gnl\|Mm7\|chr15 (79809694-79809548)

	238-958, gnl\|bosTau2\|chr5 (69308994-69309695)
	238-958, gnl\|Hg17\|chr22 (37456760-37456034)