Non-Coding RNA Search

Ss1.1-Pig1-6A11.5

Sequence:


               
               CCTTGCGATCCCTGCGCGACCCCGTGACCCCCCCGCTGCTTCGGCCACCATGCCGCGCTC
TTTTCTCGTCAGGAAGCCCGCCTGCTCCCGACGGAGGCCCAACTACAGCGAGCTACACGA
CTCTTCTCCAGAGTTCACTTTTCAGCAGCCCTATGACCAGGCCCACCTGCTGGCAGCTAT
CCCACCTCCTGAGGTCCTCAATCCCACCGCCTCACTGCCCACGCTCATCTGGGACTCTCT
CCTGGCACCCCAAGCCCAGCCGATTGGCTGGGCCTCCCTTCTGCCCCAGGAGATCCCCAG
GGCTGTCGAGCTGACCTCCCTGTCTGACGAGGACAGTGGGAAAGGCTCCCAGCCCCCCAG
CCCTGGCTGCTGCAGGGCCACGTCCGGACCCACACCGGCGAGAAGCCCTTCTCCTGCTCC
CACTGCAGCCGCGCCTTTGCTGACCGCTCCAACCTGAGAGCCCATCTCCAGACCCACTCG
GATGTCAAGAAATACCAGTGCAAGACGTGCTCCAGGACCTTCTCTCGAATGTCCCTGCTC
CACAAGCACCAAGAGTCGGGCTGCTCAGGGGGCCCCCGCTGACTCTCAAGGTTCCTTCCC
GCCTCTCCAGGCTTCACCCGGCCGCGGCCTCCTCCAGGTCCAGAAGGAAGGCCCGGGCAT
CCTCCTTACTGCCACAGAAGCCCCGGCTGAGCTCGGCCTTCTGGCTGCGTTGGTCCCAGG
ACTCTGAGGACCGTTTCCCAGGGCTCTGCTCCGGTGCCTCCCTGGGCTCTGAGAGGCCTT
TCTGTGGACGGCTGAAGCCGCTGCTCTGGAGCATTCCATCTAGAGGTGGCCTTTCTGTGT
GGGTTTGTGTATCTAAAGCTGTTTTGAGCTCCAGGACTAAAGCCGGCAGACTGATGGGAA
GCTCCCACCCCATTCAGGGGGCCCCAGTGTCCCCCACAGGCACCCTCCGGCCACCCCTCC
AGGAGGTGTGACTAACTATGCAGTCATCCACCCCCAGGTGCACCTGCGGGGGTGGTCGCT
GACACAAGGACTGTGTCTAGACCCCAGGATGCCCCAGGGTCTGGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGCGATCCCTGCGCGACCCCGTGACCCCCCCGCTGCTTCGGCCACCATGCCGCGCTC
TTTTCTCGTCAGGAAGCCCGCCTGCTCCCGACGGAGGCCCAACTACAGCGAGCTACACGA
CTCTTCTCCAGAGTTCACTTTTCAGCAGCCCTATGACCAGGCCCACCTGCTGGCAGCTAT
CCCACCTCCTGAGGTCCTCAATCCCACCGCCTCACTGCCCACGCTCATCTGGGACTCTCT
CCTGGCACCCCAAGCCCAGCCGATTGGCTGGGCCTCCCTTCTGCCCCAGGAGATCCCCAG
GGCTGTCGAGCTGACCTCCCTGTCTGACGAGGACAGTGGGAAAGGCTCCCAGCCCCCCAG
CCCTGGCTGCTGCAGGGCCACGTCCGGACCCACACCGGCGAGAAGCCCTTCTCCTGCTCC
CACTGCAGCCGCGCCTTTGCTGACCGCTCCAACCTGAGAGCCCATCTCCAGACCCACTCG
GATGTCAAGAAATACCAGTGCAAGACGTGCTCCAGGACCTTCTCTCGAATGTCCCTGCTC
CACAAGCACCAAGAGTCGGGCTGCTCAGGGGGCCCCCGCTGACTCTCAAGGTTCCTTCCC
GCCTCTCCAGGCTTCACCCGGCCGCGGCCTCCTCCAGGTCCAGAAGGAAGGCCCGGGCAT
CCTCCTTACTGCCACAGAAGCCCCGGCTGAGCTCGGCCTTCTGGCTGCGTTGGTCCCAGG
ACTCTGAGGACCGTTTCCCAGGGCTCTGCTCCGGTGCCTCCCTGGGCTCTGAGAGGCCTT
TCTGTGGACGGCTGAAGCCGCTGCTCTGGAGCATTCCATCTAGAGGTGGCCTTTCTGTGT
GGGTTTGTGTATCTAAAGCTGTTTTGAGCTCCAGGACTAAAGCCGGCAGACTGATGGGAA
GCTCCCACCCCATTCAGGGGGCCCCAGTGTCCCCCACAGGCACCCTCCGGCCACCCCTCC
AGGAGGTGTGACTAACTATGCAGTCATCCACCCCCAGGTGCACCTGCGGGGGTGGTCGCT
GACACAAGGACTGTGTCTAGACCCCAGGATGCCCCAGGGTCTGGGCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33521477|gb|AAQ21376.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33521477|gb|AAQ21376.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               168-363, - strand, RNAz p=0.988919

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               168-363, - strand, RNAz p=0.988919

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               129-363, gnl|bosTau2|chr13 (59281522-59281756)
               

               
               129-363, gnl|Hg17|chr20 (48033765-48033999)
               

               
               129-363, gnl|Mm7|chr2 (167279322-167279556)
               


               
               397-707, gnl|bosTau2|chr13 (59285758-59286073)
               

               
               397-707, gnl|Hg17|chr20 (48037815-48038141)
               

               
               397-707, gnl|Mm7|chr2 (167282552-167282815)
               


               
               835-1068, gnl|bosTau2|chr13 (59286238-59286464)
               

               
               835-1068, gnl|Hg17|chr20 (48038295-48038526)
               

               
               835-1068, gnl|Mm7|chr2 (167282938-167283187)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-363, gnl|bosTau2|chr13 (59281522-59281756)
               

               
               129-363, gnl|Hg17|chr20 (48033765-48033999)
               

               
               129-363, gnl|Mm7|chr2 (167279322-167279556)
               


               
               397-707, gnl|bosTau2|chr13 (59285758-59286073)
               

               
               397-707, gnl|Hg17|chr20 (48037815-48038141)
               

               
               397-707, gnl|Mm7|chr2 (167282552-167282815)
               


               
               835-1068, gnl|bosTau2|chr13 (59286238-59286464)
               

               
               835-1068, gnl|Hg17|chr20 (48038295-48038526)
               

               
               835-1068, gnl|Mm7|chr2 (167282938-167283187)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               eep (0.245128)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               eep (0.245128)
               

               
               pla (0.133672)

	129-363, gnl\|bosTau2\|chr13 (59281522-59281756)
	129-363, gnl\|Hg17\|chr20 (48033765-48033999)
	129-363, gnl\|Mm7\|chr2 (167279322-167279556)

	397-707, gnl\|bosTau2\|chr13 (59285758-59286073)
	397-707, gnl\|Hg17\|chr20 (48037815-48038141)
	397-707, gnl\|Mm7\|chr2 (167282552-167282815)

	835-1068, gnl\|bosTau2\|chr13 (59286238-59286464)
	835-1068, gnl\|Hg17\|chr20 (48038295-48038526)
	835-1068, gnl\|Mm7\|chr2 (167282938-167283187)