Non-Coding RNA Search

Ss1.1-Pig1-6C11.5

Sequence:


               
               GGTCGGGGCTGCCCCAGAGCCCCCATACACAGCACTGGCTGACTGGACACTGAGGGAACG
GCTGCTGCCAAGCCTTCTCCCTGCCGCCCCTCGGGGCAGCCTCACTAGCCAGAGCAGTGG
GCGGGGCAGCGCCTCGTTCCTTCGGCCCCCCTCCACGGCCCCCTCTGCAGGAGGCAGCTA
CCTCAGCCCCGCTTCAGGAGACACCAGCAGCTGGGCCAGTGGCCCTGAGAGGTGGCCCCG
AAGGGAGCATGTGGTGACAGTCAGCAAGAGGAGGAACACATCTGTGGATGAGAACTATGA
ATGGGACTCAGAATTCCCAGGGGACATGGAACTGCTGGAGACTCTGCACCTGGGCTTGGC
TGGCCCTCGATCCAGACTTGAAGCTGAGCCAGACCTAGGTGTGGGAGCTCTCCAGGAAGG
TGCAAAGACTTCAGAGGAGGGCTGCCTCCTAAACACCACCCATGGGCCTGGCCCTGAGGC
CCGCTGTGCTGCTCTTCGGGAGGAATTCCTGGCCTTCCGCCGCCGCCGAGATGCTGCCAG
GTCCCGGCTACCAGCCTATCGCCAGCCAATCTCCCACCCTGAACAGGCCACTCTGCTGTG
AATGCCCCAACGTGAGGCAGGGTGAAGGCACACAGACCCTGCAGAGGAGGCCCCCAGCAA
GACCTAGCTCCAGCCTGGGACACTGCCCCTGCCCCTGTGGTGCCCAGGCACACATCCTGA
CCATAGGCTTGGTGTGGGGTGTATGTGCTGAACCCCTGGAGCCTGGGGGACTGAAACAGG
GATCTTAGGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTAGTGGT
GTGGGTGAGGACTTTTTACAGGTGAATAAAGTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCGGGGCTGCCCCAGAGCCCCCATACACAGCACTGGCTGACTGGACACTGAGGGAACG
GCTGCTGCCAAGCCTTCTCCCTGCCGCCCCTCGGGGCAGCCTCACTAGCCAGAGCAGTGG
GCGGGGCAGCGCCTCGTTCCTTCGGCCCCCCTCCACGGCCCCCTCTGCAGGAGGCAGCTA
CCTCAGCCCCGCTTCAGGAGACACCAGCAGCTGGGCCAGTGGCCCTGAGAGGTGGCCCCG
AAGGGAGCATGTGGTGACAGTCAGCAAGAGGAGGAACACATCTGTGGATGAGAACTATGA
ATGGGACTCAGAATTCCCAGGGGACATGGAACTGCTGGAGACTCTGCACCTGGGCTTGGC
TGGCCCTCGATCCAGACTTGAAGCTGAGCCAGACCTAGGTGTGGGAGCTCTCCAGGAAGG
TGCAAAGACTTCAGAGGAGGGCTGCCTCCTAAACACCACCCATGGGCCTGGCCCTGAGGC
CCGCTGTGCTGCTCTTCGGGAGGAATTCCTGGCCTTCCGCCGCCGCCGAGATGCTGCCAG
GTCCCGGCTACCAGCCTATCGCCAGCCAATCTCCCACCCTGAACAGGCCACTCTGCTGTG
AATGCCCCAACGTGAGGCAGGGTGAAGGCACACAGACCCTGCAGAGGAGGCCCCCAGCAA
GACCTAGCTCCAGCCTGGGACACTGCCCCTGCCCCTGTGGTGCCCAGGCACACATCCTGA
CCATAGGCTTGGTGTGGGGTGTATGTGCTGAACCCCTGGAGCCTGGGGGACTGAAACAGG
GATCTTAGGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTTAGTGGT
GTGGGTGAGGACTTTTTACAGGTGAATAAAGTCTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8R1J8_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8R1J8_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-199, - strand, RNAz p=0.7417
               

               
               616-726, - strand, RNAz p=0.980847

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-199, - strand, RNAz p=0.7417
               

               
               616-726, - strand, RNAz p=0.980847

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-271, gnl|bosTau2|chr3 (5770879-5771149)
               

               
               1-271, gnl|Hg17|chr1 (156711290-156711020)
               

               
               1-271, gnl|Mm7|chr1 (172467650-172467920)
               


               
               418-872, gnl|bosTau2|chr3 (5771781-5772242)
               

               
               418-872, gnl|Hg17|chr1 (156710391-156709910)
               

               
               418-872, gnl|Mm7|chr1 (172468528-172469040)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-271, gnl|bosTau2|chr3 (5770879-5771149)
               

               
               1-271, gnl|Hg17|chr1 (156711290-156711020)
               

               
               1-271, gnl|Mm7|chr1 (172467650-172467920)
               


               
               418-872, gnl|bosTau2|chr3 (5771781-5772242)
               

               
               418-872, gnl|Hg17|chr1 (156710391-156709910)
               

               
               418-872, gnl|Mm7|chr1 (172468528-172469040)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	80-199, - strand, RNAz p=0.7417
	616-726, - strand, RNAz p=0.980847

	1-271, gnl\|bosTau2\|chr3 (5770879-5771149)
	1-271, gnl\|Hg17\|chr1 (156711290-156711020)
	1-271, gnl\|Mm7\|chr1 (172467650-172467920)

	418-872, gnl\|bosTau2\|chr3 (5771781-5772242)
	418-872, gnl\|Hg17\|chr1 (156710391-156709910)
	418-872, gnl\|Mm7\|chr1 (172468528-172469040)