Ss1.1-Pig1-6I11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TAAAATCCATGCTTCAATTTCCAAAGGAGATCGCAGTAATCAGTGCCCCTCCGGGTTTGC CTTAGACTCAGTGGGACCCTTCTGTGCTGATGAAGATGAATGTGCAGCAGGGAATCCCTG CTCCCATACCTGTCACAATGCCATGGGAACCTACTATGGCTCCTGCCCCAAAGGCCTCAC CATCGCTGCAGATGGAAGAACTGGTCAAGATATTGATGAGTGTGCTTGGGGTGGACACAC TTGCCATGCTGGTCAGGACTGTGACAATACCATGGGATCCTATCGCTGTGTGGTCCGCTG TGGAATGGGCTTTCGAAGAACCACTGATGGGTTGAGTTGTCAAGATATTAACGAATGTCA AGAATCCAGCCCCTGTCACCACCGCTGTTTCAATGCCATCGGAAGTTTTCACTGTGGATG TGAACCTGGGTATCAGCTCAAAGGCAGAAAATGCCTGGATATAAATGAGTGTAGACAGAA TGTGTGCAGACCAGATCAGCACTGCAAGAACACCCGTGGTGGATATAAATGCATCGATCT TTGTCCAAACGGAATGACCAAGGTAGAAAATGGAACCTGCATTGATATTGATGAGTGTAA AGATGGGACCCATCAGTGCAGATATAACCAAATATGTGAAAATACAAGAGGCAGCTATCG TTGTGTATGTCCAAGAGGTTACCGGTCTCAAGGAGTTGGAAGACCCTGTATAGATATTGA TGAATGTGAAAATAGAGACACCTGCCAGCATGAGTGTAAAAATACCTTTGGGAGCTATCA GTGTATCTGCCCTCCTGGCTATCAACTCATGCTCAATGGAAAGACATGTCAAGATGTTGA TGAGTGTCTGGAGCAGAATGTACGCTGTGGGCCGAATCGCATGTGCTTCAACATGAGAGG AAGCTACCGGTGCATCGATACGCCCTGTCCACCTGACTACCAGCGGCATCCCTTTTCAGG GCTCTGCCTCAAGAACTGTCCACCCAATGATTTGGAATGTGCCTTGAGCCCATATGCCTT GGAATACAAACTTGTCTCCCTCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TAAAATCCATGCTTCAATTTCCAAAGGAGATCGCAGTAATCAGTGCCCCTCCGGGTTTGC CTTAGACTCAGTGGGACCCTTCTGTGCTGATGAAGATGAATGTGCAGCAGGGAATCCCTG CTCCCATACCTGTCACAATGCCATGGGAACCTACTATGGCTCCTGCCCCAAAGGCCTCAC CATCGCTGCAGATGGAAGAACTGGTCAAGATATTGATGAGTGTGCTTGGGGTGGACACAC TTGCCATGCTGGTCAGGACTGTGACAATACCATGGGATCCTATCGCTGTGTGGTCCGCTG TGGAATGGGCTTTCGAAGAACCACTGATGGGTTGAGTTGTCAAGATATTAACGAATGTCA AGAATCCAGCCCCTGTCACCACCGCTGTTTCAATGCCATCGGAAGTTTTCACTGTGGATG TGAACCTGGGTATCAGCTCAAAGGCAGAAAATGCCTGGATATAAATGAGTGTAGACAGAA TGTGTGCAGACCAGATCAGCACTGCAAGAACACCCGTGGTGGATATAAATGCATCGATCT TTGTCCAAACGGAATGACCAAGGTAGAAAATGGAACCTGCATTGATATTGATGAGTGTAA AGATGGGACCCATCAGTGCAGATATAACCAAATATGTGAAAATACAAGAGGCAGCTATCG TTGTGTATGTCCAAGAGGTTACCGGTCTCAAGGAGTTGGAAGACCCTGTATAGATATTGA TGAATGTGAAAATAGAGACACCTGCCAGCATGAGTGTAAAAATACCTTTGGGAGCTATCA GTGTATCTGCCCTCCTGGCTATCAACTCATGCTCAATGGAAAGACATGTCAAGATGTTGA TGAGTGTCTGGAGCAGAATGTACGCTGTGGGCCGAATCGCATGTGCTTCAACATGAGAGG AAGCTACCGGTGCATCGATACGCCCTGTCCACCTGACTACCAGCGGCATCCCTTTTCAGG GCTCTGCCTCAAGAACTGTCCACCCAATGATTTGGAATGTGCCTTGAGCCCATATGCCTT GGAATACAAACTTGTCTCCCTCCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 208-347, gnl|bosTau2|chr16 (49260725-49260586) | |
| 208-347, gnl|Hg17|chr1 (182867595-182867734) | |
| 208-347, gnl|Mm7|chr1 (150512151-150512012) | |
| 580-716, gnl|bosTau2|chr16 (49247822-49247686) | |
| 580-716, gnl|canFam2|chr7 (22203047-22203165) | |
| 580-716, gnl|danRer3|chr20 (42785644-42785533) | |
| 580-716, gnl|dasNov1|scaffold_234288 (3766-3862) | |
| 580-716, gnl|echTel1|scaffold_143364 (502-614) | |
| 580-716, gnl|fr1|chrUn (175350512-175350596) | |
| 580-716, gnl|galGal2|chrUn (5773353-5773471) | |
| 580-716, gnl|hg17|chr1 (182875267-182875382) | |
| 580-716, gnl|Hg17|chr1 (182875298-182875434) | |
| 580-716, gnl|mm7|chr1 (150506053-150505939) | |
| 580-716, gnl|Mm7|chr1 (150506021-150505885) | |
| 580-716, gnl|monDom2|scaffold_16 (40547139-40547257) | |
| 580-716, gnl|oryCun1|scaffold_180201 (164467-164589) | |
| 580-716, gnl|panTro1|chr1 (165448049-165448164) | |
| 580-716, gnl|rheMac2|chr1 (184539421-184539306) | |
| 580-716, gnl|rn3|chr13 (65329108-65328992) | |
| 580-716, gnl|tetNig1|chr1 (15424706-15424602) | |
| 580-716, gnl|xenTro1|scaffold_160 (1546013-1545903) | |
| 832-961, gnl|bosTau2|chr16 (49228435-49228306) | |
| 832-961, gnl|canFam2|chr7 (22215650-22215810) | |
| 832-961, gnl|danRer3|chr20 (42781269-42781138) | |
| 832-961, gnl|echTel1|scaffold_315603 (66617-66458) | |
| 832-961, gnl|fr1|chrUn (175352311-175352442) | |
| 832-961, gnl|galGal2|chrUn (5780389-5780546) | |
| 832-961, gnl|hg17|chr1 (182888643-182888802) | |
| 832-961, gnl|Hg17|chr1 (182888670-182888799) | |
| 832-961, gnl|mm7|chr1 (150491134-150490975) | |
| 832-961, gnl|Mm7|chr1 (150491105-150490976) | |
| 832-961, gnl|monDom2|scaffold_16 (40557395-40557554) | |
| 832-961, gnl|oryCun1|scaffold_180201 (179680-179838) | |
| 832-961, gnl|panTro1|chr1 (165461224-165461383) | |
| 832-961, gnl|rheMac2|chr1 (184526103-184525944) | |
| 832-961, gnl|rn3|chr13 (65313790-65313659) | |
| 832-961, gnl|tetNig1|chr1 (15423197-15423066) | |
| 832-961, gnl|xenTro1|scaffold_160 (1544330-1544188) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 208-347, gnl|bosTau2|chr16 (49260725-49260586) | |
| 208-347, gnl|Hg17|chr1 (182867595-182867734) | |
| 208-347, gnl|Mm7|chr1 (150512151-150512012) | |
| 580-716, gnl|bosTau2|chr16 (49247822-49247686) | |
| 580-716, gnl|canFam2|chr7 (22203047-22203165) | |
| 580-716, gnl|danRer3|chr20 (42785644-42785533) | |
| 580-716, gnl|dasNov1|scaffold_234288 (3766-3862) | |
| 580-716, gnl|echTel1|scaffold_143364 (502-614) | |
| 580-716, gnl|fr1|chrUn (175350512-175350596) | |
| 580-716, gnl|galGal2|chrUn (5773353-5773471) | |
| 580-716, gnl|hg17|chr1 (182875267-182875382) | |
| 580-716, gnl|Hg17|chr1 (182875298-182875434) | |
| 580-716, gnl|mm7|chr1 (150506053-150505939) | |
| 580-716, gnl|Mm7|chr1 (150506021-150505885) | |
| 580-716, gnl|monDom2|scaffold_16 (40547139-40547257) | |
| 580-716, gnl|oryCun1|scaffold_180201 (164467-164589) | |
| 580-716, gnl|panTro1|chr1 (165448049-165448164) | |
| 580-716, gnl|rheMac2|chr1 (184539421-184539306) | |
| 580-716, gnl|rn3|chr13 (65329108-65328992) | |
| 580-716, gnl|tetNig1|chr1 (15424706-15424602) | |
| 580-716, gnl|xenTro1|scaffold_160 (1546013-1545903) | |
| 832-961, gnl|bosTau2|chr16 (49228435-49228306) | |
| 832-961, gnl|canFam2|chr7 (22215650-22215810) | |
| 832-961, gnl|danRer3|chr20 (42781269-42781138) | |
| 832-961, gnl|echTel1|scaffold_315603 (66617-66458) | |
| 832-961, gnl|fr1|chrUn (175352311-175352442) | |
| 832-961, gnl|galGal2|chrUn (5780389-5780546) | |
| 832-961, gnl|hg17|chr1 (182888643-182888802) | |
| 832-961, gnl|Hg17|chr1 (182888670-182888799) | |
| 832-961, gnl|mm7|chr1 (150491134-150490975) | |
| 832-961, gnl|Mm7|chr1 (150491105-150490976) | |
| 832-961, gnl|monDom2|scaffold_16 (40557395-40557554) | |
| 832-961, gnl|oryCun1|scaffold_180201 (179680-179838) | |
| 832-961, gnl|panTro1|chr1 (165461224-165461383) | |
| 832-961, gnl|rheMac2|chr1 (184526103-184525944) | |
| 832-961, gnl|rn3|chr13 (65313790-65313659) | |
| 832-961, gnl|tetNig1|chr1 (15423197-15423066) | |
| 832-961, gnl|xenTro1|scaffold_160 (1544330-1544188) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.143184) | |
| ecc (0.115035) |