Non-Coding RNA Search

Ss1.1-Pig1-70G14.5

Sequence:


               
               CAGCCTGAGGTTGAGGCCAGGCAGAATCCCTCAGTTCCCCCGCAAACCCACCCATGCCCG
TGGCCTCGCCTCACGACTGCTCACCTGGGACAGAGAAGCTCTGGCTCCTTTGACTCTGAA
AAACAGCCTGAGGAGGCGAGTTGGGAGTCAAGCTACCTTCTGGATGAAAGCCACCAGATG
AACGGAGCCCCTCTTCCCGGGGATACCCCAACCCAGACTCAGCAGGGGTTTCTGACTAGC
CCAGGGCCTCGGAGCTTCCTATCTCAGTCCCTCTGGAGTAACTTTGAGAAGGAACCCAGG
AAGAAATGGCTCTCCTGTTTACCCGTCCCACCCGTCAAGGCAAACTGAGGACTGAGACCC
TCTGACAACCTTTAAGTGGCCAGATGTGGCTGCAGTGGGGTCCTTGATACTGAGCTCCAG
CTGGCACTGCCTAAGCAAGGAGGGTGGGCAGGGTACCCCTCTGGCCAGTCCTGCCCCACC
AGCCACACAGGCTGAGGCAGGGGCGGGAGGCTGAGGACTGAGTTTTGCACTATTGATGCG
GTACCATAAGGCCTCCTCTGGTGGGAAACACAGGCACACGGGTGGCGATGCATCTGGCAC
AAGCATTTGGATCCACATCTCCGCACAAGTGTGAATACCTCTGCACACACGGGACCCGTC
TGTGTGTGCGTGCACATGGGGGTGGGGATGTGGAGAAGGCAATACTTCCGGTAACCAGTC
CACCTTGCTCCCACTGTCTGCATCCTCCTGGCCCACCCTGGCAGTGCCCAGGGAGGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTGAGGTTGAGGCCAGGCAGAATCCCTCAGTTCCCCCGCAAACCCACCCATGCCCG
TGGCCTCGCCTCACGACTGCTCACCTGGGACAGAGAAGCTCTGGCTCCTTTGACTCTGAA
AAACAGCCTGAGGAGGCGAGTTGGGAGTCAAGCTACCTTCTGGATGAAAGCCACCAGATG
AACGGAGCCCCTCTTCCCGGGGATACCCCAACCCAGACTCAGCAGGGGTTTCTGACTAGC
CCAGGGCCTCGGAGCTTCCTATCTCAGTCCCTCTGGAGTAACTTTGAGAAGGAACCCAGG
AAGAAATGGCTCTCCTGTTTACCCGTCCCACCCGTCAAGGCAAACTGAGGACTGAGACCC
TCTGACAACCTTTAAGTGGCCAGATGTGGCTGCAGTGGGGTCCTTGATACTGAGCTCCAG
CTGGCACTGCCTAAGCAAGGAGGGTGGGCAGGGTACCCCTCTGGCCAGTCCTGCCCCACC
AGCCACACAGGCTGAGGCAGGGGCGGGAGGCTGAGGACTGAGTTTTGCACTATTGATGCG
GTACCATAAGGCCTCCTCTGGTGGGAAACACAGGCACACGGGTGGCGATGCATCTGGCAC
AAGCATTTGGATCCACATCTCCGCACAAGTGTGAATACCTCTGCACACACGGGACCCGTC
TGTGTGTGCGTGCACATGGGGGTGGGGATGTGGAGAAGGCAATACTTCCGGTAACCAGTC
CACCTTGCTCCCACTGTCTGCATCCTCCTGGCCCACCCTGGCAGTGCCCAGGGAGGAACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               573-687, + strand, RNAz p=0.826085

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               573-687, + strand, RNAz p=0.826085

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-770, gnl|bosTau2|chr19 (37509313-37508544)
               

               
               4-770, gnl|Hg17|chr17 (40213828-40214587)
               

               
               4-770, gnl|Mm7|chr11 (102888402-102889129)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-770, gnl|bosTau2|chr19 (37509313-37508544)
               

               
               4-770, gnl|Hg17|chr17 (40213828-40214587)
               

               
               4-770, gnl|Mm7|chr11 (102888402-102889129)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	4-770, gnl\|bosTau2\|chr19 (37509313-37508544)
	4-770, gnl\|Hg17\|chr17 (40213828-40214587)
	4-770, gnl\|Mm7\|chr11 (102888402-102889129)