Non-Coding RNA Search

Ss1.1-Pig1-70H01.5

Sequence:


               
               TTTTTTTTTTTGACTAGGAGAACCAAATCCGGAAGCCACCGTATAGGCTTAGTTGGTGTG
TCGTCTCTGAGTTTGTTGCTCGTGTGTGCAACAGGGTATGGAGTGTCTGTTAGGTGGCCC
CATTGGTGGGCTGGCTGATCCCGGTGGCCGTGGGCGGTCACCTCTTTGAGCAGTCCCGCC
CGTGTCTGCGAACTTGGGGCCTGGGCTGGGGCCTGGGCGGCTGTGATGCTGAGGAGCCCA
AGTAAGAATTGAATCCTGGGCCCTCAGGCCGGGACTGTGGGATGGGAGAAGGGGTGGCCG
GGCCCTGAGCATCTCCCAGGGACATGCCCTGCCTTTGATGCTCTCTCTGGGGGCCGCTTT
CTCCTGGGAGGTGACGAGGGGAATCCTGAGCACACCTGGCACGGAGCTGCCCCACGAAGG
ACCAGGTTCACTTTTGATTAGCTCCTGTGGCCCTACCCTGGGCTGGAATCAGGAATGTTC
CAAAGAGTGATAGTCTTTTGCTTTTGGCAAAACTCTACTTAATCCAATGGGTTTTTCCCT
GTACAGTAGATTTTCCAAATGTAATAAACTTTAATATAAAGTAGTCATGTGAACTCTACT
GCCTTTGCCTCTTTCTGTGCTGGTTGGGGGGCCGCGACCAGCCTTTTCTCTAAATGCCGA
TGATATTGGGAAACGTGGCGAAAAGCTCTGTGCCTTCGTCTTTCTCGTGGGGAGGGAGTC
TGGGGCCAGAGTCCCTCTGCTTTGTTTCTTGTTTTGTGTTTTGTCTTTGCTAAAATTGGC
AGGTTCAGCCAAGGTTATACAGGGCCCGATGGTCATTTCTGTGTTGCCAAATTCCAAGGA
CCATCTCCTAAGTGGCGACGAAGCTGTGTGGGCCCCAGTCCAGCTTGACCTGAGGCCATG
GGTCCCCGGAGGCCCGGAGCCCAGGCCTGCATCTCAGCCGTCTTGGACGGTCCTCTGCTC
ACACCTTTGCTGGGACCAGAGGCCTCCCGCCCTGGCTCCTGGGAATGCCTGCGCTTGTGT
ATTTAATTTGACAACGTTCCAGCTGTTCCGTTGGCTGCGCTGAGAGGGGACCGTCTGTGA
CACAGAGAGACGCCCCGTCCAACGAAGGGAACCTGTGTCCTGTGTTCCTTACGGGGACTG
TCTGCCCGGAGTGTCGGACTGGATGTGATGCGGGGGCCGGGGAGGGATCTGTGACTGTGC
TCATCTCTGCGGGTCCGTGGGACGGCGCTCAGCCCGCGGCTGGGCCCATTCGTGTAACTA
ATAAACGGTACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTGACTAGGAGAACCAAATCCGGAAGCCACCGTATAGGCTTAGTTGGTGTG
TCGTCTCTGAGTTTGTTGCTCGTGTGTGCAACAGGGTATGGAGTGTCTGTTAGGTGGCCC
CATTGGTGGGCTGGCTGATCCCGGTGGCCGTGGGCGGTCACCTCTTTGAGCAGTCCCGCC
CGTGTCTGCGAACTTGGGGCCTGGGCTGGGGCCTGGGCGGCTGTGATGCTGAGGAGCCCA
AGTAAGAATTGAATCCTGGGCCCTCAGGCCGGGACTGTGGGATGGGAGAAGGGGTGGCCG
GGCCCTGAGCATCTCCCAGGGACATGCCCTGCCTTTGATGCTCTCTCTGGGGGCCGCTTT
CTCCTGGGAGGTGACGAGGGGAATCCTGAGCACACCTGGCACGGAGCTGCCCCACGAAGG
ACCAGGTTCACTTTTGATTAGCTCCTGTGGCCCTACCCTGGGCTGGAATCAGGAATGTTC
CAAAGAGTGATAGTCTTTTGCTTTTGGCAAAACTCTACTTAATCCAATGGGTTTTTCCCT
GTACAGTAGATTTTCCAAATGTAATAAACTTTAATATAAAGTAGTCATGTGAACTCTACT
GCCTTTGCCTCTTTCTGTGCTGGTTGGGGGGCCGCGACCAGCCTTTTCTCTAAATGCCGA
TGATATTGGGAAACGTGGCGAAAAGCTCTGTGCCTTCGTCTTTCTCGTGGGGAGGGAGTC
TGGGGCCAGAGTCCCTCTGCTTTGTTTCTTGTTTTGTGTTTTGTCTTTGCTAAAATTGGC
AGGTTCAGCCAAGGTTATACAGGGCCCGATGGTCATTTCTGTGTTGCCAAATTCCAAGGA
CCATCTCCTAAGTGGCGACGAAGCTGTGTGGGCCCCAGTCCAGCTTGACCTGAGGCCATG
GGTCCCCGGAGGCCCGGAGCCCAGGCCTGCATCTCAGCCGTCTTGGACGGTCCTCTGCTC
ACACCTTTGCTGGGACCAGAGGCCTCCCGCCCTGGCTCCTGGGAATGCCTGCGCTTGTGT
ATTTAATTTGACAACGTTCCAGCTGTTCCGTTGGCTGCGCTGAGAGGGGACCGTCTGTGA
CACAGAGAGACGCCCCGTCCAACGAAGGGAACCTGTGTCCTGTGTTCCTTACGGGGACTG
TCTGCCCGGAGTGTCGGACTGGATGTGATGCGGGGGCCGGGGAGGGATCTGTGACTGTGC
TCATCTCTGCGGGTCCGTGGGACGGCGCTCAGCCCGCGGCTGGGCCCATTCGTGTAACTA
ATAAACGGTACT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               71-214, - strand, RNAz p=0.999437
               

               
               500-760, + strand, RNAz p=0.975136

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               71-214, - strand, RNAz p=0.999437
               

               
               500-760, + strand, RNAz p=0.975136

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               92-215, + strand, RNAmicro p=0.967221

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               92-215, + strand, RNAmicro p=0.967221

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001006946, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001006946, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-991, gnl|bosTau2|chr11 (61255281-61254263)
               

               
               1-991, gnl|Hg17|chr2 (20323496-20322483)
               

               
               1-991, gnl|Mm7|chr12 (8818698-8819680)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-991, gnl|bosTau2|chr11 (61255281-61254263)
               

               
               1-991, gnl|Hg17|chr2 (20323496-20322483)
               

               
               1-991, gnl|Mm7|chr12 (8818698-8819680)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cli (0.458435)
               

               
               eru (0.360144)
               

               
               ese (0.253004)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cov (0.132153)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.458435)
               

               
               eru (0.360144)
               

               
               ese (0.253004)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               cov (0.132153)

	71-214, - strand, RNAz p=0.999437
	500-760, + strand, RNAz p=0.975136

	1-991, gnl\|bosTau2\|chr11 (61255281-61254263)
	1-991, gnl\|Hg17\|chr2 (20323496-20322483)
	1-991, gnl\|Mm7\|chr12 (8818698-8819680)

	cli (0.458435)
	eru (0.360144)
	ese (0.253004)
	nlu (0.191681)
	nep (0.183925)
	ill (0.175593)
	mcp (0.170648)
	cov (0.132153)