Non-Coding RNA Search

Ss1.1-Pig1-70J04.5

Sequence:


               
               CAGCCTGGGGCTGCTGCTCGCCTTTCTGGGCATCCTCTGGGTGAAGATGGGCCAGCCCTC
GGCGCCGCAGGAGGCGCGAGACAGCATGAAATTATTGCCAGTGGACTGTGAGAGAAAAAC
AGATGAGTTCTGTCAGGCCAAACAGAAGGCGGCCTTGCTGGAGCTGCTGCACGAACTCTA
CAACTTCCTGGCCACCCAAGCCGGTAATTTTGAGTGTGGAAATCCAGAGAAGCTGAAAAG
CAAATGCATCCCTGTAACGGAAGCCCAGGAGTACATAGCAAACGTGACCAGCAGCTCCTC
TGCCAAGTTCGAAGCCGCGCTGACCTGGATCCTGAGCAGCAACAAGGATGTGGGCATCTG
GTTGAAAGGGGAGGACCCATCTGAGCTGGTGACGACAGTGGACAAGGTGGTTTGCCTGGA
GTCTGCCCGGCCCCGAATGGGGGTCGCCTGCCGCCTGAGCCGAGCCCTGCTCACCGCCGC
CACCCACGTGCTCATCTTCTTCTGGTGCCTGGCCTTTCTGTGGGGGCTGCTGATCTTCCT
GAGGTACCGGTGGCGGAAGCTGGAAGAGGAGGAGCAGGCCATGTACGAGATGGTGAAGAA
GATTATAGACGTGGTGCAGGACCACTACGTGGACTGGGAGCAGGACATGGAGCGCTACCC
GTACGTGGGCATTCTGCATGTGCGCGACACCCTCATCCCCCCGCAGAGCCGGAGACGCAT
GAAGCGGATCTGGGACCGGGCCGTGGAGTTCCTGGCCTCCAACGAATCCCGGATCCAGAC
AGAGTCCCACCGAGTGGCCGGGGAAGACATGCTGGTGTGGCGGTGGACCAAGCCCTCCGC
CTTCTCTGACTCGGAGCGATAGGCCCTGTGTGGGGGCCTGTTCCTCTTCAGCCTGACCTA
GGCCAGTCCCCCAGGGGCGTGAGGGGCCGCTGTCCTGCCAGTGCTGCGTTCACACTTGCC
TTGACGTTCCCCCGCCTCCTGACCCTGCCTGCAGAGGCTCCGTGAGACTCTCAGAGCTGA
CCTCAGGGGAACGTGCGGCTCCTTGGAGGGCAGGGTGGAGGTGCTCTGCCCTGTTTTGCT
GGCAGAGAAGGGAAGAAGGGTTGAAGGGTTTGTGTGTTATGAAAAGATAAAGCACGATAG
CCATGATACCCTGAGAGCAAGTGTGCAGCTGGGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTGGGGCTGCTGCTCGCCTTTCTGGGCATCCTCTGGGTGAAGATGGGCCAGCCCTC
GGCGCCGCAGGAGGCGCGAGACAGCATGAAATTATTGCCAGTGGACTGTGAGAGAAAAAC
AGATGAGTTCTGTCAGGCCAAACAGAAGGCGGCCTTGCTGGAGCTGCTGCACGAACTCTA
CAACTTCCTGGCCACCCAAGCCGGTAATTTTGAGTGTGGAAATCCAGAGAAGCTGAAAAG
CAAATGCATCCCTGTAACGGAAGCCCAGGAGTACATAGCAAACGTGACCAGCAGCTCCTC
TGCCAAGTTCGAAGCCGCGCTGACCTGGATCCTGAGCAGCAACAAGGATGTGGGCATCTG
GTTGAAAGGGGAGGACCCATCTGAGCTGGTGACGACAGTGGACAAGGTGGTTTGCCTGGA
GTCTGCCCGGCCCCGAATGGGGGTCGCCTGCCGCCTGAGCCGAGCCCTGCTCACCGCCGC
CACCCACGTGCTCATCTTCTTCTGGTGCCTGGCCTTTCTGTGGGGGCTGCTGATCTTCCT
GAGGTACCGGTGGCGGAAGCTGGAAGAGGAGGAGCAGGCCATGTACGAGATGGTGAAGAA
GATTATAGACGTGGTGCAGGACCACTACGTGGACTGGGAGCAGGACATGGAGCGCTACCC
GTACGTGGGCATTCTGCATGTGCGCGACACCCTCATCCCCCCGCAGAGCCGGAGACGCAT
GAAGCGGATCTGGGACCGGGCCGTGGAGTTCCTGGCCTCCAACGAATCCCGGATCCAGAC
AGAGTCCCACCGAGTGGCCGGGGAAGACATGCTGGTGTGGCGGTGGACCAAGCCCTCCGC
CTTCTCTGACTCGGAGCGATAGGCCCTGTGTGGGGGCCTGTTCCTCTTCAGCCTGACCTA
GGCCAGTCCCCCAGGGGCGTGAGGGGCCGCTGTCCTGCCAGTGCTGCGTTCACACTTGCC
TTGACGTTCCCCCGCCTCCTGACCCTGCCTGCAGAGGCTCCGTGAGACTCTCAGAGCTGA
CCTCAGGGGAACGTGCGGCTCCTTGGAGGGCAGGGTGGAGGTGCTCTGCCCTGTTTTGCT
GGCAGAGAAGGGAAGAAGGGTTGAAGGGTTTGTGTGTTATGAAAAGATAAAGCACGATAG
CCATGATACCCTGAGAGCAAGTGTGCAGCTGGGTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|22122563|ref|NP_666187.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|22122563|ref|NP_666187.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               357-507, gnl|bosTau2|chr23 (6291525-6291375)
               

               
               357-507, gnl|Hg17|chr6 (33854146-33853996)
               

               
               357-507, gnl|Mm7|chr17 (25379618-25379468)
               


               
               698-1064, gnl|bosTau2|chr23 (6287839-6287481)
               

               
               698-1064, gnl|Hg17|chr6 (33848547-33848175)
               

               
               698-1064, gnl|Mm7|chr17 (25376432-25376127)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               357-507, gnl|bosTau2|chr23 (6291525-6291375)
               

               
               357-507, gnl|Hg17|chr6 (33854146-33853996)
               

               
               357-507, gnl|Mm7|chr17 (25379618-25379468)
               


               
               698-1064, gnl|bosTau2|chr23 (6287839-6287481)
               

               
               698-1064, gnl|Hg17|chr6 (33848547-33848175)
               

               
               698-1064, gnl|Mm7|chr17 (25376432-25376127)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)

	357-507, gnl\|bosTau2\|chr23 (6291525-6291375)
	357-507, gnl\|Hg17\|chr6 (33854146-33853996)
	357-507, gnl\|Mm7\|chr17 (25379618-25379468)

	698-1064, gnl\|bosTau2\|chr23 (6287839-6287481)
	698-1064, gnl\|Hg17\|chr6 (33848547-33848175)
	698-1064, gnl\|Mm7\|chr17 (25376432-25376127)