Non-Coding RNA Search

Ss1.1-Pig1-70N21.5

Sequence:


               
               AAAAGAAGAAGCAGCAGAAGAGGGTCCCAGCAAAGAGGAAGCTGGAGACTGAGGACTACC
CCAGCTTCATGGCCAAGCGCTTTGCTGACTTCACTGTCTACAGGAACCGCACGCTCCAGA
AGTGGCACGATAAGACTAAGCTGGCTTCTGGAAAACTGGGGAAGGGTTTTGGGGCCTTTG
AACGCTCAATCTTGACTCAGATCGATCATATTCTGATGGACAAAGAAAGGTTACTTCGAA
GGACACAGACCAAGCGCTCCATCTACCGAATTCTTGGCAAACCGGAACCAGCAGCACAGC
CTGTCCCAGAGAGTTTGCCGGGACAGCCGGAGATCCTTCCTCAGGCCCCTGCCAATGCCC
ACCTGAAGGACTTGGATGAAGAAATCTTTGATGATGATGACTTTTACCACCAGCTCCTTC
GAGAACTCATAGAACGGAAGACCAGCTCCTTGGATCCCAATGATCAGGTGGCCATGGGAA
GGCAGTGGCTTGCAATCCAGAAATTGAGAAGCAAAATCCACAAGAAAGTAGATAGGAAAG
CCAGCAAAGGAAGGAAACTTCGATTTCACGTCCTTAGCAAGCTTCTGAGCTTCATGGCGC
CCATTGACCACACCACAATGAATGATGATGCCAGGACAGAGTTGTATCGATCTCTTTTTG
GCCAACTCAACCCGCCCGACGACGGCCACGGGCCCTGAAGGTGCCCGGCCCTCGCCCGAG
ACCAGACGGAGGGGCCTCCGCCCATCCAGCCGCAAACGCAGGGGCCCGGCCCGCTGGCCT
GTGGGGTTGGGCGGGTGGGAATCCCGGGCTGGTGCACCATCTGGGACCCCTGCCTGACGA
GTGCCAGGAAAGCCTGGACGCCAGCTCCGTGGGCAGAGGGCTCCCCCAACGGCCTTTCAC
CACCACAAATAAAGAGTGTTTTTATTGTCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGAAGAAGCAGCAGAAGAGGGTCCCAGCAAAGAGGAAGCTGGAGACTGAGGACTACC
CCAGCTTCATGGCCAAGCGCTTTGCTGACTTCACTGTCTACAGGAACCGCACGCTCCAGA
AGTGGCACGATAAGACTAAGCTGGCTTCTGGAAAACTGGGGAAGGGTTTTGGGGCCTTTG
AACGCTCAATCTTGACTCAGATCGATCATATTCTGATGGACAAAGAAAGGTTACTTCGAA
GGACACAGACCAAGCGCTCCATCTACCGAATTCTTGGCAAACCGGAACCAGCAGCACAGC
CTGTCCCAGAGAGTTTGCCGGGACAGCCGGAGATCCTTCCTCAGGCCCCTGCCAATGCCC
ACCTGAAGGACTTGGATGAAGAAATCTTTGATGATGATGACTTTTACCACCAGCTCCTTC
GAGAACTCATAGAACGGAAGACCAGCTCCTTGGATCCCAATGATCAGGTGGCCATGGGAA
GGCAGTGGCTTGCAATCCAGAAATTGAGAAGCAAAATCCACAAGAAAGTAGATAGGAAAG
CCAGCAAAGGAAGGAAACTTCGATTTCACGTCCTTAGCAAGCTTCTGAGCTTCATGGCGC
CCATTGACCACACCACAATGAATGATGATGCCAGGACAGAGTTGTATCGATCTCTTTTTG
GCCAACTCAACCCGCCCGACGACGGCCACGGGCCCTGAAGGTGCCCGGCCCTCGCCCGAG
ACCAGACGGAGGGGCCTCCGCCCATCCAGCCGCAAACGCAGGGGCCCGGCCCGCTGGCCT
GTGGGGTTGGGCGGGTGGGAATCCCGGGCTGGTGCACCATCTGGGACCCCTGCCTGACGA
GTGCCAGGAAAGCCTGGACGCCAGCTCCGTGGGCAGAGGGCTCCCCCAACGGCCTTTCAC
CACCACAAATAAAGAGTGTTTTTATTGTCAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9P0A4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9P0A4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-118, - strand, RNAz p=0.948301

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-118, - strand, RNAz p=0.948301

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               3-165, gnl|bosTau2|chr19 (4854285-4854123)
               

               
               3-165, gnl|canFam2|chr9 (40132599-40132787)
               

               
               3-165, gnl|danRer3|chr5 (61588432-61588268)
               

               
               3-165, gnl|dasNov1|scaffold_179716 (1098-1286)
               

               
               3-165, gnl|echTel1|scaffold_324149 (38081-37893)
               

               
               3-165, gnl|fr1|chrUn (18284150-18283964)
               

               
               3-165, gnl|galGal2|chr19 (7971063-7971251)
               

               
               3-165, gnl|hg17|chr17 (32419943-32420134)
               

               
               3-165, gnl|Hg17|chr17 (32419968-32420133)
               

               
               3-165, gnl|loxAfr1|scaffold_4672 (43219-43404)
               

               
               3-165, gnl|mm7|chr11 (84541184-84540996)
               

               
               3-165, gnl|Mm7|chr11 (84541157-84540995)
               

               
               3-165, gnl|monDom2|scaffold_135 (1527571-1527383)
               

               
               3-165, gnl|oryCun1|scaffold_208693 (175763-175951)
               

               
               3-165, gnl|panTro1|chr19 (35591069-35591260)
               

               
               3-165, gnl|rheMac2|chr16 (46981630-46981821)
               

               
               3-165, gnl|rn3|chr10 (72768072-72767884)
               

               
               3-165, gnl|tetNig1|chr3 (927944-927777)
               

               
               3-165, gnl|xenTro1|scaffold_580 (476534-476343)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-165, gnl|bosTau2|chr19 (4854285-4854123)
               

               
               3-165, gnl|canFam2|chr9 (40132599-40132787)
               

               
               3-165, gnl|danRer3|chr5 (61588432-61588268)
               

               
               3-165, gnl|dasNov1|scaffold_179716 (1098-1286)
               

               
               3-165, gnl|echTel1|scaffold_324149 (38081-37893)
               

               
               3-165, gnl|fr1|chrUn (18284150-18283964)
               

               
               3-165, gnl|galGal2|chr19 (7971063-7971251)
               

               
               3-165, gnl|hg17|chr17 (32419943-32420134)
               

               
               3-165, gnl|Hg17|chr17 (32419968-32420133)
               

               
               3-165, gnl|loxAfr1|scaffold_4672 (43219-43404)
               

               
               3-165, gnl|mm7|chr11 (84541184-84540996)
               

               
               3-165, gnl|Mm7|chr11 (84541157-84540995)
               

               
               3-165, gnl|monDom2|scaffold_135 (1527571-1527383)
               

               
               3-165, gnl|oryCun1|scaffold_208693 (175763-175951)
               

               
               3-165, gnl|panTro1|chr19 (35591069-35591260)
               

               
               3-165, gnl|rheMac2|chr16 (46981630-46981821)
               

               
               3-165, gnl|rn3|chr10 (72768072-72767884)
               

               
               3-165, gnl|tetNig1|chr3 (927944-927777)
               

               
               3-165, gnl|xenTro1|scaffold_580 (476534-476343)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.267344)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               lnt (0.142308)

	3-165, gnl\|bosTau2\|chr19 (4854285-4854123)
	3-165, gnl\|canFam2\|chr9 (40132599-40132787)
	3-165, gnl\|danRer3\|chr5 (61588432-61588268)
	3-165, gnl\|dasNov1\|scaffold_179716 (1098-1286)
	3-165, gnl\|echTel1\|scaffold_324149 (38081-37893)
	3-165, gnl\|fr1\|chrUn (18284150-18283964)
	3-165, gnl\|galGal2\|chr19 (7971063-7971251)
	3-165, gnl\|hg17\|chr17 (32419943-32420134)
	3-165, gnl\|Hg17\|chr17 (32419968-32420133)
	3-165, gnl\|loxAfr1\|scaffold_4672 (43219-43404)
	3-165, gnl\|mm7\|chr11 (84541184-84540996)
	3-165, gnl\|Mm7\|chr11 (84541157-84540995)
	3-165, gnl\|monDom2\|scaffold_135 (1527571-1527383)
	3-165, gnl\|oryCun1\|scaffold_208693 (175763-175951)
	3-165, gnl\|panTro1\|chr19 (35591069-35591260)
	3-165, gnl\|rheMac2\|chr16 (46981630-46981821)
	3-165, gnl\|rn3\|chr10 (72768072-72767884)
	3-165, gnl\|tetNig1\|chr3 (927944-927777)
	3-165, gnl\|xenTro1\|scaffold_580 (476534-476343)