Non-Coding RNA Search

Ss1.1-Pig1-70N24.5

Sequence:


               
               GCGAGGCTAGTGAGCGTTGGCCACCGGCCGGGGACGGGGCGGGGCGGTGTGCGTCCTGGC
TCTTCCTGGCCGCACTAGGCGGGCGCGGGTAGCCGGGCCGGTGCCGTCCGGGAGGCGCAG
GCAGGAGCCCGGGCATTGCGGCTGCGGAGTGGAGAGAACCCGGAGCCCGGCGCCGGGCTA
AGCGGTCTCGGGTCTCGGGGGGCGACGCACAGGCTTCAAGGGGTGCTTGGTTGGTCTGTC
CCGTCGCTGCGAGGTATGACTCGTCCTCGCGAGATTTGTCCACTGGCGGAGCCTGGCAGA
GGGTTGACGTCCCGGGCTCCTCAGGAACCAGTGCCCTAAGGACTTGTGTGTGAGGTGGCC
TGCTGCCTGGCCCATCGCCATGCACACCCTTGTGTTCCTGAGCACACGGCAGGTGCTCCA
GTGCCAGTCAGCTGCCTGCCAGGCCCTGCCCCTGCTGCCGAGAGAGCTCTTTCCCTTGCT
GTTCAAAGTGGCCTTCATGGACAAGAAGACCATCGTGCTGCGCGAGCTGGTGCACACGTG
GCCCTTCCCGCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGCCGGGC
CTTGCTGCAGGAGCGACCTANCACAGAGAGCATGCAGGCCGTGATCCTGGGGCTGACTGC
CCGGCTCCACACCCCGGAGACGGAGGCTGGCACACAGCCCCTCTGCAGGAAGCACGCACT
GCGTGTGCTGGACATGACGGGCCTCCTGGACGACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGGCTAGTGAGCGTTGGCCACCGGCCGGGGACGGGGCGGGGCGGTGTGCGTCCTGGC
TCTTCCTGGCCGCACTAGGCGGGCGCGGGTAGCCGGGCCGGTGCCGTCCGGGAGGCGCAG
GCAGGAGCCCGGGCATTGCGGCTGCGGAGTGGAGAGAACCCGGAGCCCGGCGCCGGGCTA
AGCGGTCTCGGGTCTCGGGGGGCGACGCACAGGCTTCAAGGGGTGCTTGGTTGGTCTGTC
CCGTCGCTGCGAGGTATGACTCGTCCTCGCGAGATTTGTCCACTGGCGGAGCCTGGCAGA
GGGTTGACGTCCCGGGCTCCTCAGGAACCAGTGCCCTAAGGACTTGTGTGTGAGGTGGCC
TGCTGCCTGGCCCATCGCCATGCACACCCTTGTGTTCCTGAGCACACGGCAGGTGCTCCA
GTGCCAGTCAGCTGCCTGCCAGGCCCTGCCCCTGCTGCCGAGAGAGCTCTTTCCCTTGCT
GTTCAAAGTGGCCTTCATGGACAAGAAGACCATCGTGCTGCGCGAGCTGGTGCACACGTG
GCCCTTCCCGCTGCTCAGCTTCCAGCAGCTGCTGCAGGAGTGTGCCCACTGCAGCCGGGC
CTTGCTGCAGGAGCGACCTANCACAGAGAGCATGCAGGCCGTGATCCTGGGGCTGACTGC
CCGGCTCCACACCCCGGAGACGGAGGCTGGCACACAGCCCCTCTGCAGGAAGCACGCACT
GCGTGTGCTGGACATGACGGGCCTCCTGGACGACGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               512-721, - strand, RNAz p=0.933998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               512-721, - strand, RNAz p=0.933998

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               545-686, - strand, RNAmicro p=0.993865
               

               
               590-669, + strand, RNAmicro p=0.984052

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               545-686, - strand, RNAmicro p=0.993865
               

               
               590-669, + strand, RNAmicro p=0.984052

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               353-721, gnl|bosTau2|chr14 (3245924-3245555)
               

               
               353-721, gnl|Hg17|chr8 (145715891-145716260)
               

               
               353-721, gnl|Mm7|chr15 (76795417-76795786)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               353-721, gnl|bosTau2|chr14 (3245924-3245555)
               

               
               353-721, gnl|Hg17|chr8 (145715891-145716260)
               

               
               353-721, gnl|Mm7|chr15 (76795417-76795786)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	545-686, - strand, RNAmicro p=0.993865
	590-669, + strand, RNAmicro p=0.984052

	353-721, gnl\|bosTau2\|chr14 (3245924-3245555)
	353-721, gnl\|Hg17\|chr8 (145715891-145716260)
	353-721, gnl\|Mm7\|chr15 (76795417-76795786)