Non-Coding RNA Search

Ss1.1-Pig1-71O02.5

Sequence:


               
               GGAGGTCATTGGGGCAGGCTCCTTCGGGGAGGTGCGCCGGGGCCGCCTGCAGCCCCGGGG
CCGGCGGGAGCAGCCTGTGGCCATCCAGGCCCTGTGGACCGGAGGGGCTGAGAGTCTCCA
GATGACCTTTCTAGGCCAGGCTGCGGTGCTGGGCCAGTTTCAGCACCCCAACATTCTGCG
GCTGGAGGGCGTGGTCACCAAGAGCCGGCCCCTCATGGTGCTGACCGAGCTCATGGAGCT
GGGCCCCCTGGACAGCTTCCTCAGGCAGCGGGAGGGCCAGTTCAGCAGCCTGCAACTGGT
GGCCATGCAGCGTGGAGTGGCCGCCGCCATGCAGTACCTGTCCAGCTTTGCCTTCGTCCA
CCGCGCGCTCTCTGCCCACAGCGTGCTGGTAAACAGCCACCTGGTGTGCAAAGTGGCGCG
TCTTGGCCACACTCCTCAGGGCCCAAGGTGTATGCTTCGCTGGGCAGCCCCAGAGGTCAT
TGCACACGGGAAATATACAACGTCCAGTGATGTTTGGAGCTTTGGGATCGTGATGTGGGA
AGTGATGAGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGTCATTGGGGCAGGCTCCTTCGGGGAGGTGCGCCGGGGCCGCCTGCAGCCCCGGGG
CCGGCGGGAGCAGCCTGTGGCCATCCAGGCCCTGTGGACCGGAGGGGCTGAGAGTCTCCA
GATGACCTTTCTAGGCCAGGCTGCGGTGCTGGGCCAGTTTCAGCACCCCAACATTCTGCG
GCTGGAGGGCGTGGTCACCAAGAGCCGGCCCCTCATGGTGCTGACCGAGCTCATGGAGCT
GGGCCCCCTGGACAGCTTCCTCAGGCAGCGGGAGGGCCAGTTCAGCAGCCTGCAACTGGT
GGCCATGCAGCGTGGAGTGGCCGCCGCCATGCAGTACCTGTCCAGCTTTGCCTTCGTCCA
CCGCGCGCTCTCTGCCCACAGCGTGCTGGTAAACAGCCACCTGGTGTGCAAAGTGGCGCG
TCTTGGCCACACTCCTCAGGGCCCAAGGTGTATGCTTCGCTGGGCAGCCCCAGAGGTCAT
TGCACACGGGAAATATACAACGTCCAGTGATGTTTGGAGCTTTGGGATCGTGATGTGGGA
AGTGATGAGTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               93-212, + strand, RNAz p=0.549951

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-212, + strand, RNAz p=0.549951

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-265, gnl|bosTau2|chr4 (60468635-60468384)
               

               
               14-265, gnl|Hg17|chr7 (142083080-142083331)
               

               
               14-265, gnl|Mm7|chr6 (41549135-41549385)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-265, gnl|bosTau2|chr4 (60468635-60468384)
               

               
               14-265, gnl|Hg17|chr7 (142083080-142083331)
               

               
               14-265, gnl|Mm7|chr6 (41549135-41549385)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               ton (0.1755)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ton (0.1755)

	14-265, gnl\|bosTau2\|chr4 (60468635-60468384)
	14-265, gnl\|Hg17\|chr7 (142083080-142083331)
	14-265, gnl\|Mm7\|chr6 (41549135-41549385)