Non-Coding RNA Search

Ss1.1-Pig1-72D24.5

Sequence:


               
               GCCCAGCCCCGTGGATGCAGCTTTTGAGGATGCCCAGGGCCACATCTGGTTCTTCCAAGG
AGCTCAGTACTGGGTGTATGATGGTGAGAAGCCAGCCCTGGGTCCCGCACCCCTCTCTGA
GCTGGGCCTGCCCGGCTCCCCTGTCCACGCCGCCCTGGTCTGGGGCCCTGAGAAGAACAA
GGTCTACTTCTTCCGAGGCGGAGACTACTGGCGCTTCCATCCCAGCACCCACCGTGTGGA
TAGCCCCGTGCCTCGCCGGGCCACTGACTGGCGAGGGGTGCCCTCTGAGATCGACGCTGC
CTTCCAGGACGCCGATGGCTATGCCTACTTCCTGCGTGGCCGCCTCTACTGGAAGTTTGA
CCCTGTGAAGGTGAAGGCCCTGGAGGGCTTCCCCCGCCTCGTGGGCCTGGACTTCTTTGG
CTGTTCCGAGCCTGCCAACACTTTCCGCTAGCCACGGCTTGGATGTCCTCAGGGCTCCTG
ACCCTTGTCTGGCCAGCTGGAGACCGCGGTCATCTTTGTTGCTGTGGGCACCAGGCTTGG
CACAGAGCCCTGGGGGGTGGGGAGGAGGGCTGCTGCCACCAAGACTGCAGGGGGGCCATG
CAGGTCATGGCCAGCTGCCATCAACCGTCTCAGACTTGGACCAGGAGGCTTTAGTGTTAA
GAGTGAGGGTGGCTGAGGGTGCCCATGGCTCCACCATTCCCGTGCAGGTCACGGTAAAAC
CCAGCTGCCCTTGGTCTCCACCCTCATCTCTCAGGTAGGACCTTGGCTGGGCTGGGGGAG
CTGGAGTCCTCACCATCCCTGCTGCGGGGGTTCCACAGGGTGCTGGTGGTCTCGGGGCCC
TGTGCCTTCTGCCCTTTCCCGAGAAGTCAGCTCTGGGTGGGTGCTTGCAGCTGGCCGTCT
TCCAGCTGGTAATTCTGGAGACCTGTTCCCAAGATCCAGGCCAAAACGTCCAGTCAGCTG
GTGAGGGGGGTGCTTTCTGCTCAAGACCCCGGGCCCTGGAGGCCCCAACATACCTCAGTC
GTGTCACGGGTCAGATCCTCTTCAGCCCTCCCCAACCCCAGGTCCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAGCCCCGTGGATGCAGCTTTTGAGGATGCCCAGGGCCACATCTGGTTCTTCCAAGG
AGCTCAGTACTGGGTGTATGATGGTGAGAAGCCAGCCCTGGGTCCCGCACCCCTCTCTGA
GCTGGGCCTGCCCGGCTCCCCTGTCCACGCCGCCCTGGTCTGGGGCCCTGAGAAGAACAA
GGTCTACTTCTTCCGAGGCGGAGACTACTGGCGCTTCCATCCCAGCACCCACCGTGTGGA
TAGCCCCGTGCCTCGCCGGGCCACTGACTGGCGAGGGGTGCCCTCTGAGATCGACGCTGC
CTTCCAGGACGCCGATGGCTATGCCTACTTCCTGCGTGGCCGCCTCTACTGGAAGTTTGA
CCCTGTGAAGGTGAAGGCCCTGGAGGGCTTCCCCCGCCTCGTGGGCCTGGACTTCTTTGG
CTGTTCCGAGCCTGCCAACACTTTCCGCTAGCCACGGCTTGGATGTCCTCAGGGCTCCTG
ACCCTTGTCTGGCCAGCTGGAGACCGCGGTCATCTTTGTTGCTGTGGGCACCAGGCTTGG
CACAGAGCCCTGGGGGGTGGGGAGGAGGGCTGCTGCCACCAAGACTGCAGGGGGGCCATG
CAGGTCATGGCCAGCTGCCATCAACCGTCTCAGACTTGGACCAGGAGGCTTTAGTGTTAA
GAGTGAGGGTGGCTGAGGGTGCCCATGGCTCCACCATTCCCGTGCAGGTCACGGTAAAAC
CCAGCTGCCCTTGGTCTCCACCCTCATCTCTCAGGTAGGACCTTGGCTGGGCTGGGGGAG
CTGGAGTCCTCACCATCCCTGCTGCGGGGGTTCCACAGGGTGCTGGTGGTCTCGGGGCCC
TGTGCCTTCTGCCCTTTCCCGAGAAGTCAGCTCTGGGTGGGTGCTTGCAGCTGGCCGTCT
TCCAGCTGGTAATTCTGGAGACCTGTTCCCAAGATCCAGGCCAAAACGTCCAGTCAGCTG
GTGAGGGGGGTGCTTTCTGCTCAAGACCCCGGGCCCTGGAGGCCCCAACATACCTCAGTC
GTGTCACGGGTCAGATCCTCTTCAGCCCTCCCCAACCCCAGGTCCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61827915|ref|XP_610628.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61827915|ref|XP_610628.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               436-573, - strand, RNAz p=0.99698
               

               
               650-762, - strand, RNAz p=0.982567

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               436-573, - strand, RNAz p=0.99698
               

               
               650-762, - strand, RNAz p=0.982567

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               317-1047, gnl|bosTau2|chr17 (41465697-41466409)
               

               
               317-1047, gnl|Hg17|chr22 (22450151-22450968)
               

               
               317-1047, gnl|Mm7|chr10 (75579767-75578970)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               317-1047, gnl|bosTau2|chr17 (41465697-41466409)
               

               
               317-1047, gnl|Hg17|chr22 (22450151-22450968)
               

               
               317-1047, gnl|Mm7|chr10 (75579767-75578970)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pla (0.267344)
               

               
               nlu (0.191681)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               nlu (0.191681)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	436-573, - strand, RNAz p=0.99698
	650-762, - strand, RNAz p=0.982567

	317-1047, gnl\|bosTau2\|chr17 (41465697-41466409)
	317-1047, gnl\|Hg17\|chr22 (22450151-22450968)
	317-1047, gnl\|Mm7\|chr10 (75579767-75578970)

	pla (0.267344)
	nlu (0.191681)
	hlv (0.139256)
	cov (0.132153)
	ese (0.126502)
	ecc (0.115035)
	eje (0.0988338)