Non-Coding RNA Search

Ss1.1-Pig1-72F21.5

Sequence:


               
               CCCACCCCTTCTGCCCAGAGCCCAGCGCCCAGCTCCATGGCCTGGTGCAGGCCGCCGGCC
GGGGCTGGGGCCCATTCACTCCCGCACCAACCTGATGGAGGCAGAACTCATGGACGCAGA
CTCGGACTTCTGAGCCTGGAGAGCAGGACCTGGGACAAGAAGGAGGAACAAATACGTTCC
GAGGCTCATCTTCCTCCCTGAGGGTGCTTCCCCAGGGTCTGCTCTTCCAGAGAACCCGAG
GGCCCAGCGGCGCCCCCAGGAGAGTTCCTCGTGTCTGGCTCTCGCAGCAGGACTGTGGGA
AAGAGCCCTGCCGTTGCCACCCATAGGCCTCACCCCTGGCCAGGCCCTGGAGCTCAGGGT
CCTTGTTTCTGCCCCAGCAGCTGGAGCCTGGCTGGCAGCATCTATCTCCAACAGGAGTCA
TGGGGTATGTAGAGCTTCTGGTGGGCCAGAAAAGGTGGAAGCAGTGGTGGCGGTACAGGG
ATTTGGCGGTGGTGGCCAGGGAGGCAGCCAAGCCCATGTCTGGCAGGTAAGGGCTGGCTG
CCCTTTTCTGTGCCGGGGGTGCCCTTCCCTGGCACTCGCAGACCCAAAGTGTTGATTGTG
CCATTAGCCCTTTGTCCAAGTGAGGATGGAGCTCCCTCCTCCCTTTCCGGGGTGCTTGTG
GGGTGGGTATGCCCATGCCCACGGGGCTGTAACCTCTCAGTGTCCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACCCCTTCTGCCCAGAGCCCAGCGCCCAGCTCCATGGCCTGGTGCAGGCCGCCGGCC
GGGGCTGGGGCCCATTCACTCCCGCACCAACCTGATGGAGGCAGAACTCATGGACGCAGA
CTCGGACTTCTGAGCCTGGAGAGCAGGACCTGGGACAAGAAGGAGGAACAAATACGTTCC
GAGGCTCATCTTCCTCCCTGAGGGTGCTTCCCCAGGGTCTGCTCTTCCAGAGAACCCGAG
GGCCCAGCGGCGCCCCCAGGAGAGTTCCTCGTGTCTGGCTCTCGCAGCAGGACTGTGGGA
AAGAGCCCTGCCGTTGCCACCCATAGGCCTCACCCCTGGCCAGGCCCTGGAGCTCAGGGT
CCTTGTTTCTGCCCCAGCAGCTGGAGCCTGGCTGGCAGCATCTATCTCCAACAGGAGTCA
TGGGGTATGTAGAGCTTCTGGTGGGCCAGAAAAGGTGGAAGCAGTGGTGGCGGTACAGGG
ATTTGGCGGTGGTGGCCAGGGAGGCAGCCAAGCCCATGTCTGGCAGGTAAGGGCTGGCTG
CCCTTTTCTGTGCCGGGGGTGCCCTTCCCTGGCACTCGCAGACCCAAAGTGTTGATTGTG
CCATTAGCCCTTTGTCCAAGTGAGGATGGAGCTCCCTCCTCCCTTTCCGGGGTGCTTGTG
GGGTGGGTATGCCCATGCCCACGGGGCTGTAACCTCTCAGTGTCCAGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               285-639, - strand, RNAz p=0.999777

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               285-639, - strand, RNAz p=0.999777

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               521-604, + strand, RNAmicro p=0.998332

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               521-604, + strand, RNAmicro p=0.998332

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               343-621, BP251446 Sugano cDNA library, hippocampus Homo sapiens cDNA clone 
(dbj|BP251446.1|), blast E-value=5e-34, identity=82.86% 
               

               
               325-621, 602298685F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb|BG033244.1|), 
blast E-value=9e-36, identity=82.94% 
               

               
               343-621, UI-E-CQ1-aev-i-05-0-UI.r1 UI-E-CQ1 Homo sapiens cDNA clone 
(gb|BM695194.1|), blast E-value=5e-34, identity=82.86% 
               

               
               343-621, UI-E-EJ0-aht-e-05-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM714878.1|), blast E-value=5e-34, identity=82.86% 
               

               
               343-621, UI-E-EO1-aja-k-14-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone 
(gb|BM725012.1|), blast E-value=5e-34, identity=82.86% 
               

               
               343-621, HESC3_102_E08.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone 
(gb|CX788788.1|), blast E-value=5e-34, identity=82.86%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               343-621, BP251446 Sugano cDNA library, hippocampus Homo sapiens cDNA clone 
(dbj|BP251446.1|), blast E-value=5e-34, identity=82.86% 
               

               
               325-621, 602298685F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb|BG033244.1|), 
blast E-value=9e-36, identity=82.94% 
               

               
               343-621, UI-E-CQ1-aev-i-05-0-UI.r1 UI-E-CQ1 Homo sapiens cDNA clone 
(gb|BM695194.1|), blast E-value=5e-34, identity=82.86% 
               

               
               343-621, UI-E-EJ0-aht-e-05-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM714878.1|), blast E-value=5e-34, identity=82.86% 
               

               
               343-621, UI-E-EO1-aja-k-14-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone 
(gb|BM725012.1|), blast E-value=5e-34, identity=82.86% 
               

               
               343-621, HESC3_102_E08.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone 
(gb|CX788788.1|), blast E-value=5e-34, identity=82.86%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-698, gnl|bosTau2|chr4 (49797564-49796873)
               

               
               1-698, gnl|Hg17|chr7 (128446080-128446809)
               

               
               1-698, gnl|Mm7|chr6 (29692268-29692963)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-698, gnl|bosTau2|chr4 (49797564-49796873)
               

               
               1-698, gnl|Hg17|chr7 (128446080-128446809)
               

               
               1-698, gnl|Mm7|chr6 (29692268-29692963)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               eru (0.120048)

	343-621, BP251446 Sugano cDNA library, hippocampus Homo sapiens cDNA clone (dbj\|BP251446.1\|), blast E-value=5e-34, identity=82.86%
	325-621, 602298685F1 NIH_MGC_87 Homo sapiens cDNA clone IMAGE (gb\|BG033244.1\|), blast E-value=9e-36, identity=82.94%
	343-621, UI-E-CQ1-aev-i-05-0-UI.r1 UI-E-CQ1 Homo sapiens cDNA clone (gb\|BM695194.1\|), blast E-value=5e-34, identity=82.86%
	343-621, UI-E-EJ0-aht-e-05-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM714878.1\|), blast E-value=5e-34, identity=82.86%
	343-621, UI-E-EO1-aja-k-14-0-UI.r1 UI-E-EO1 Homo sapiens cDNA clone (gb\|BM725012.1\|), blast E-value=5e-34, identity=82.86%
	343-621, HESC3_102_E08.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone (gb\|CX788788.1\|), blast E-value=5e-34, identity=82.86%

	1-698, gnl\|bosTau2\|chr4 (49797564-49796873)
	1-698, gnl\|Hg17\|chr7 (128446080-128446809)
	1-698, gnl\|Mm7\|chr6 (29692268-29692963)