Non-Coding RNA Search

Ss1.1-Pig1-72G14.5

Sequence:


               
               GACTCTCCTCTGCTCACCTCTCTGGATGTCCCCATTCTCTCCATTGCCTCTTAACCCACG
GCCCCACCCCCATCAAGTCTCTGCCCCATGCCCTGCCCTTGGCATCTTTTACCCAAGTCA
TGGAGAGCGCCCCTTCCCTGACCCTGCCCTGTGCTCCTTCCCAGGCTGATTGGGAGGGAA
GGCTCCTGGAACACTGGGCATGCTCCCCAGCTCTGCCCTCTGTCCTGCCAAGCTCCCAGC
CCCATCAGCGCTGAACTCCAGCCTTGGGGCCAGCAGGCTTTTTGGCTGGACACCGCCTGG
GCACTCCCTGGTGAGGGGAAAGGGACCCTATCATCCTGCTTTAATTTATTCGGGTCCCTG
TACCCCCAGCCGCATGCCTTTTATTTCCCTCGTCGCCCTCTTGCATGCTTTACCTGTCCT
GCACCCATGCCAACGTGCCAAGTCTCCCTTGGGGGCCCAGCTGAGGTTGGGTGTTCCCAT
TGGGTGGGGCCTGGCGAGGCCTCTGGTACCTGCTGCTGCCCCCCCCCTGCAGTGGGTACT
TCTAGGCCTGTGCCAAGCAACAGCTGTTATTTTCATGGTTTATAAACAATAAACTGTGAT
GCCAGGTCTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTCTCCTCTGCTCACCTCTCTGGATGTCCCCATTCTCTCCATTGCCTCTTAACCCACG
GCCCCACCCCCATCAAGTCTCTGCCCCATGCCCTGCCCTTGGCATCTTTTACCCAAGTCA
TGGAGAGCGCCCCTTCCCTGACCCTGCCCTGTGCTCCTTCCCAGGCTGATTGGGAGGGAA
GGCTCCTGGAACACTGGGCATGCTCCCCAGCTCTGCCCTCTGTCCTGCCAAGCTCCCAGC
CCCATCAGCGCTGAACTCCAGCCTTGGGGCCAGCAGGCTTTTTGGCTGGACACCGCCTGG
GCACTCCCTGGTGAGGGGAAAGGGACCCTATCATCCTGCTTTAATTTATTCGGGTCCCTG
TACCCCCAGCCGCATGCCTTTTATTTCCCTCGTCGCCCTCTTGCATGCTTTACCTGTCCT
GCACCCATGCCAACGTGCCAAGTCTCCCTTGGGGGCCCAGCTGAGGTTGGGTGTTCCCAT
TGGGTGGGGCCTGGCGAGGCCTCTGGTACCTGCTGCTGCCCCCCCCCTGCAGTGGGTACT
TCTAGGCCTGTGCCAAGCAACAGCTGTTATTTTCATGGTTTATAAACAATAAACTGTGAT
GCCAGGTCTTAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               159-396, - strand, RNAz p=0.998641
               

               
               436-610, - strand, RNAz p=0.998919

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-396, - strand, RNAz p=0.998641
               

               
               436-610, - strand, RNAz p=0.998919

Predicted microRNA(s): 3 entry(ies)

More info

Predicted microRNA(s): 3 entry(ies)

Help | Less info


               
               487-569, + strand, RNAmicro p=0.999976
               

               
               206-377, - strand, RNAmicro p=0.998657
               

               
               302-381, + strand, RNAmicro p=0.95269

Predicted microRNA(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               487-569, + strand, RNAmicro p=0.999976
               

               
               206-377, - strand, RNAmicro p=0.998657
               

               
               302-381, + strand, RNAmicro p=0.95269

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               436-606, BP389817 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP389817.1|), blast E-value=2e-35, identity=85.96% 
               

               
               436-606, DB295285 ADRGL2 Homo sapiens cDNA clone ADRGL2004077 3', mRNA 
(dbj|DB295285.1|), blast E-value=2e-35, identity=85.96% 
               

               
               436-606, DB303699 BRAWH1 Homo sapiens cDNA clone BRAWH1000103 3', mRNA 
(dbj|DB303699.1|), blast E-value=2e-35, identity=85.96% 
               

               
               436-606, DB324487 NT2RP6 Homo sapiens cDNA clone NT2RP6000093 3', mRNA 
(dbj|DB324487.1|), blast E-value=2e-35, identity=85.96% 
               

               
               436-606, DB326530 OCBBF2 Homo sapiens cDNA clone OCBBF2027524 3', mRNA 
(dbj|DB326530.1|), blast E-value=2e-35, identity=85.96% 
               

               
               436-606, UI-H-FE1-beb-i-02-0-UI.s1 NCI_CGAP_FE1 Homo sapiens cDNA clone 
(gb|CA424472.1|), blast E-value=2e-35, identity=85.96%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               436-606, BP389817 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP389817.1|), blast E-value=2e-35, identity=85.96% 
               

               
               436-606, DB295285 ADRGL2 Homo sapiens cDNA clone ADRGL2004077 3', mRNA 
(dbj|DB295285.1|), blast E-value=2e-35, identity=85.96% 
               

               
               436-606, DB303699 BRAWH1 Homo sapiens cDNA clone BRAWH1000103 3', mRNA 
(dbj|DB303699.1|), blast E-value=2e-35, identity=85.96% 
               

               
               436-606, DB324487 NT2RP6 Homo sapiens cDNA clone NT2RP6000093 3', mRNA 
(dbj|DB324487.1|), blast E-value=2e-35, identity=85.96% 
               

               
               436-606, DB326530 OCBBF2 Homo sapiens cDNA clone OCBBF2027524 3', mRNA 
(dbj|DB326530.1|), blast E-value=2e-35, identity=85.96% 
               

               
               436-606, UI-H-FE1-beb-i-02-0-UI.s1 NCI_CGAP_FE1 Homo sapiens cDNA clone 
(gb|CA424472.1|), blast E-value=2e-35, identity=85.96%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-610, gnl|bosTau2|chr3 (9254290-9254894)
               

               
               1-610, gnl|Hg17|chr1 (151969906-151970502)
               

               
               1-610, gnl|Mm7|chr3 (89361151-89360587)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-610, gnl|bosTau2|chr3 (9254290-9254894)
               

               
               1-610, gnl|Hg17|chr1 (151969906-151970502)
               

               
               1-610, gnl|Mm7|chr3 (89361151-89360587)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ebs (0.118301)

	159-396, - strand, RNAz p=0.998641
	436-610, - strand, RNAz p=0.998919

	487-569, + strand, RNAmicro p=0.999976
	206-377, - strand, RNAmicro p=0.998657
	302-381, + strand, RNAmicro p=0.95269

	436-606, BP389817 Homo sapiens pancreatic islet Homo sapiens cDNA clone (dbj\|BP389817.1\|), blast E-value=2e-35, identity=85.96%
	436-606, DB295285 ADRGL2 Homo sapiens cDNA clone ADRGL2004077 3', mRNA (dbj\|DB295285.1\|), blast E-value=2e-35, identity=85.96%
	436-606, DB303699 BRAWH1 Homo sapiens cDNA clone BRAWH1000103 3', mRNA (dbj\|DB303699.1\|), blast E-value=2e-35, identity=85.96%
	436-606, DB324487 NT2RP6 Homo sapiens cDNA clone NT2RP6000093 3', mRNA (dbj\|DB324487.1\|), blast E-value=2e-35, identity=85.96%
	436-606, DB326530 OCBBF2 Homo sapiens cDNA clone OCBBF2027524 3', mRNA (dbj\|DB326530.1\|), blast E-value=2e-35, identity=85.96%
	436-606, UI-H-FE1-beb-i-02-0-UI.s1 NCI_CGAP_FE1 Homo sapiens cDNA clone (gb\|CA424472.1\|), blast E-value=2e-35, identity=85.96%

	1-610, gnl\|bosTau2\|chr3 (9254290-9254894)
	1-610, gnl\|Hg17\|chr1 (151969906-151970502)
	1-610, gnl\|Mm7\|chr3 (89361151-89360587)