Non-Coding RNA Search

Ss1.1-Pig1-72J17.5

Sequence:


               
               TGCAGTTACTTTGGTTTAACCATGTGTGTTTAGGGCTAGATCTAGGGGAGTAGAAGGAGA
ACCAGGAGCGAGTGCACGTCTCTTCACACTTTTCCACCCGGTGCCCTGACCCTGCTACAT
ATCTTTGAAATACAGGCCTCCGTAGATGTCTTTTTCTCTGTCAGAGGTGTCATCTGTGCC
TTTCCCAGTGTTCATCTGACAGTGAATCTCAATGCCTCTACATTTGATGTTAAACCACAC
TCAGGTGACACTGATCCATGTGGCTCTTGTCCCGGTGGTGCCTCATCGTTAGTATGAGGA
CAGTTCTCTCTTGCTTTAGGAAAAGGTTTTTTCTCCCTGACCTTGTGCCAACTATCAGCA
ACACCTACATCATCTTATGGATTGTAGGACTGTTGCCTATTTTCCTAAACTCCTTCCAAG
TTCTTACAAAGGCTTATCTATTTTTGTGTTCATAATGGGATGGACGATTTCAGTGGCTTT
CTGGCCTCCTTTTGTGAGTTTAAAATCCAAATGAGGTTGGTTTCCTTGTCATTACAAGGT
AATATCTTTGTGAGGTTATTCCACTGGTTATGCGATCACTTGGGTGTCACAGTATCTTTA
ATGGCCTTCATTCTTGGTTGTGAAATTTCATTTTATATGCTCATTCACCCTCTACAAATC
TACCCACTTTGGGTTGTGGTGCCTGTGTATCTTTGCCCGTCTGGTCTCCAGTTGGTGGAA
TTACCTTTTTTGTACTGCCACTTCTCAGCATCTTTGAAATTTGACATAATGTTGCTTCAT
TCCAGTTTTTTTTTTCCTTTAGTTTTTGTAATGTGTTGATTGTATTTAACTATGTGAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGTTACTTTGGTTTAACCATGTGTGTTTAGGGCTAGATCTAGGGGAGTAGAAGGAGA
ACCAGGAGCGAGTGCACGTCTCTTCACACTTTTCCACCCGGTGCCCTGACCCTGCTACAT
ATCTTTGAAATACAGGCCTCCGTAGATGTCTTTTTCTCTGTCAGAGGTGTCATCTGTGCC
TTTCCCAGTGTTCATCTGACAGTGAATCTCAATGCCTCTACATTTGATGTTAAACCACAC
TCAGGTGACACTGATCCATGTGGCTCTTGTCCCGGTGGTGCCTCATCGTTAGTATGAGGA
CAGTTCTCTCTTGCTTTAGGAAAAGGTTTTTTCTCCCTGACCTTGTGCCAACTATCAGCA
ACACCTACATCATCTTATGGATTGTAGGACTGTTGCCTATTTTCCTAAACTCCTTCCAAG
TTCTTACAAAGGCTTATCTATTTTTGTGTTCATAATGGGATGGACGATTTCAGTGGCTTT
CTGGCCTCCTTTTGTGAGTTTAAAATCCAAATGAGGTTGGTTTCCTTGTCATTACAAGGT
AATATCTTTGTGAGGTTATTCCACTGGTTATGCGATCACTTGGGTGTCACAGTATCTTTA
ATGGCCTTCATTCTTGGTTGTGAAATTTCATTTTATATGCTCATTCACCCTCTACAAATC
TACCCACTTTGGGTTGTGGTGCCTGTGTATCTTTGCCCGTCTGGTCTCCAGTTGGTGGAA
TTACCTTTTTTGTACTGCCACTTCTCAGCATCTTTGAAATTTGACATAATGTTGCTTCAT
TCCAGTTTTTTTTTTCCTTTAGTTTTTGTAATGTGTTGATTGTATTTAACTATGTGAGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               176-292, + strand, RNAz p=0.611643

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-292, + strand, RNAz p=0.611643

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-820, gnl|bosTau2|chr11 (32948162-32947349)
               

               
               1-820, gnl|Hg17|chr17 (4120220-4119398)
               

               
               1-820, gnl|Mm7|chr11 (72767137-72767954)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-820, gnl|bosTau2|chr11 (32948162-32947349)
               

               
               1-820, gnl|Hg17|chr17 (4120220-4119398)
               

               
               1-820, gnl|Mm7|chr11 (72767137-72767954)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               vin (0.332557)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               sme (0.305437)
               

               
               mas (0.210305)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               ldo (0.0970026)

	1-820, gnl\|bosTau2\|chr11 (32948162-32947349)
	1-820, gnl\|Hg17\|chr17 (4120220-4119398)
	1-820, gnl\|Mm7\|chr11 (72767137-72767954)

	vin (0.332557)
	sme (0.305437)
	mas (0.210305)
	tbr (0.154178)
	fat (0.147427)
	kid (0.129735)
	ret (0.128733)
	tra (0.123092)
	cbl (0.114797)
	ldo (0.0970026)