Non-Coding RNA Search

Ss1.1-Pig1-72L11.5

Sequence:


               
               TGGCCAAGCTCGGTTTCTTCCCCCAGGAGGCCTAGGGCCCGGCCCAGGCCTGGAGGGGGG
CTCTGAGCTGAAGCCAACGCCCGCGCCAGGACAGACGAGCAGATGGGGTCCTGGAGCCGG
CCCTGAGCCAGAAGCTGAACAGAGGGACAAATGGCCAGGCCTTGGAGGCAGACCTGAGCC
GGCACCAAACGTCCAGCCCAGGACAAGACCTCGAAAGGTGACCTTCTCTCTTCCCTCGTG
GCACTACCAGCCACCAGGAGACTTTTAAGAAAGCACCAAAGACCAAAGGGCTTGGAGCCG
TGCAAAGAGGCTCAGCCCTTGGAAGGGGACCCTTAGGGCAGTCAGCACCCCCTTGCCGGT
CCCTGGAGCGGCTGCCTGCCGGTGCCTCATTGGCTGGATCTCCAGGGTACCCCCTCCACC
CCGCCCCCCGGCCAGTTTCCAAGCCCTGGGTACCAGCTCCCCCTGGTGGCCATACTTCAG
CCCATTCCCAGGTGGCTTTTCCATCTGAAAGACCCAGAGAGCGTGTGGCTGTCCCAGGTG
CCCATGGGGCAGCAGAGCCAGGAGAGGCTGGCATGGCCTCCCCGGCTGTTTTCCATTCCA
TCCTGTATGTGCCTGAGAAAGGCCCCTGAACGTTCTTAAGATGTATCAGGGTCCCAGCCC
TCTCTCTTGACCTCCTCCGCCCCACCAGCTGAGCCTTATGCTGCAGGGAGCCCTGCCCCC
ACCACCGCTGGAAGGATCAGGGGCACTTTTCTCCCAGAGTAAAACCCAGACGGGCCTCGG
GATGCCCAGGCCTGTTTGCAGCTGTAGACAGCCATTCAGACAACCGGGGGCCGAGCTCCC
CCAGCCCTGCACGCAGGACTGGGGCGTGGCGGGCAGGACCTGGGCCCCTCCGCACCCCTC
AGTCTGCTCGGGACCCGGGTCCAACCTGGACACATCCCTCACCACGGCCGATTTCCTCCT
CTGAATGGAATGTAACACGATCTCTATTTAATAAAGGACGGCTTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCAAGCTCGGTTTCTTCCCCCAGGAGGCCTAGGGCCCGGCCCAGGCCTGGAGGGGGG
CTCTGAGCTGAAGCCAACGCCCGCGCCAGGACAGACGAGCAGATGGGGTCCTGGAGCCGG
CCCTGAGCCAGAAGCTGAACAGAGGGACAAATGGCCAGGCCTTGGAGGCAGACCTGAGCC
GGCACCAAACGTCCAGCCCAGGACAAGACCTCGAAAGGTGACCTTCTCTCTTCCCTCGTG
GCACTACCAGCCACCAGGAGACTTTTAAGAAAGCACCAAAGACCAAAGGGCTTGGAGCCG
TGCAAAGAGGCTCAGCCCTTGGAAGGGGACCCTTAGGGCAGTCAGCACCCCCTTGCCGGT
CCCTGGAGCGGCTGCCTGCCGGTGCCTCATTGGCTGGATCTCCAGGGTACCCCCTCCACC
CCGCCCCCCGGCCAGTTTCCAAGCCCTGGGTACCAGCTCCCCCTGGTGGCCATACTTCAG
CCCATTCCCAGGTGGCTTTTCCATCTGAAAGACCCAGAGAGCGTGTGGCTGTCCCAGGTG
CCCATGGGGCAGCAGAGCCAGGAGAGGCTGGCATGGCCTCCCCGGCTGTTTTCCATTCCA
TCCTGTATGTGCCTGAGAAAGGCCCCTGAACGTTCTTAAGATGTATCAGGGTCCCAGCCC
TCTCTCTTGACCTCCTCCGCCCCACCAGCTGAGCCTTATGCTGCAGGGAGCCCTGCCCCC
ACCACCGCTGGAAGGATCAGGGGCACTTTTCTCCCAGAGTAAAACCCAGACGGGCCTCGG
GATGCCCAGGCCTGTTTGCAGCTGTAGACAGCCATTCAGACAACCGGGGGCCGAGCTCCC
CCAGCCCTGCACGCAGGACTGGGGCGTGGCGGGCAGGACCTGGGCCCCTCCGCACCCCTC
AGTCTGCTCGGGACCCGGGTCCAACCTGGACACATCCCTCACCACGGCCGATTTCCTCCT
CTGAATGGAATGTAACACGATCTCTATTTAATAAAGGACGGCTTTGTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-150, - strand, RNAz p=0.999668
               

               
               409-509, - strand, RNAz p=0.937215

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-150, - strand, RNAz p=0.999668
               

               
               409-509, - strand, RNAz p=0.937215

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1-77, + strand, RNAmicro p=0.990832

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1-77, + strand, RNAmicro p=0.990832

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-618, gnl|bosTau2|chr29 (31588090-31588691)
               

               
               1-618, gnl|Hg17|chr11 (61422360-61421700)
               

               
               1-618, gnl|Mm7|chr19 (9714630-9715240)
               


               
               713-1008, gnl|bosTau2|chr29 (31588728-31589017)
               

               
               713-1008, gnl|Hg17|chr11 (61421662-61421353)
               

               
               713-1008, gnl|Mm7|chr19 (9715288-9715577)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-618, gnl|bosTau2|chr29 (31588090-31588691)
               

               
               1-618, gnl|Hg17|chr11 (61422360-61421700)
               

               
               1-618, gnl|Mm7|chr19 (9714630-9715240)
               


               
               713-1008, gnl|bosTau2|chr29 (31588728-31589017)
               

               
               713-1008, gnl|Hg17|chr11 (61421662-61421353)
               

               
               713-1008, gnl|Mm7|chr19 (9715288-9715577)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               elu (0.385356)
               

               
               nco (0.161734)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nco (0.161734)
               

               
               cly (0.120642)

	40-150, - strand, RNAz p=0.999668
	409-509, - strand, RNAz p=0.937215

	1-618, gnl\|bosTau2\|chr29 (31588090-31588691)
	1-618, gnl\|Hg17\|chr11 (61422360-61421700)
	1-618, gnl\|Mm7\|chr19 (9714630-9715240)

	713-1008, gnl\|bosTau2\|chr29 (31588728-31589017)
	713-1008, gnl\|Hg17\|chr11 (61421662-61421353)
	713-1008, gnl\|Mm7\|chr19 (9715288-9715577)