Non-Coding RNA Search

Ss1.1-Pig1-72P01.5

Sequence:


               
               GGCCGCTCGGTCCGGGGAACGCGGGCGATCGTCCGGGGCCATGAGGCAGCTCGCCGCCGG
CTCCCTTCTCTCACTCCTGAAGGTGCTGCTCCTGCCTCTGGCACCGGCCCCAGCCCAGGA
TGCAAATTCGGCCTCCACTCCAGGCAGCCCCCTCTCTCCCACCGAGTATGAGCGCTTCTT
CGCACTGCTGACCCCAACCTGGAAGGCAGAGACTACCTGCCGCCTCCGGGCCACCCACGG
CTGCCGGAACCCCACCCTCGTCCAGCTGGACCAGTATGAAAACCACGGCCTGGTGCCGGA
CGGCGCTGTCTGCTCCGACCTCCCTTATGCCTCCTGGTTCGAGTCCTTTTGCCAGTTTAC
TCAGTACCGTTGCTCCAACCACGTCTACTACGCCAAGAGAGTCCGGTGCTCCCAGCCTGT
CTCAATCCTCTCACCTAACTCTCTCAAGGAGGTGGACACTTCCTCTGAAGTGCCGATCAC
CACGATGACCTCCCCCGTGTCCTCCCACATCACAGCCACAGGGCGACAGGTCTTCCAGCC
CTGGCCCGAGCGGCTCAACAACAACGTGGAGGAGCTGCTACAATCCTCCTTGTCCCTGGG
CGGCCAGGAGCAGGGCCAGGAGCACAAACAGGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCGCTCGGTCCGGGGAACGCGGGCGATCGTCCGGGGCCATGAGGCAGCTCGCCGCCGG
CTCCCTTCTCTCACTCCTGAAGGTGCTGCTCCTGCCTCTGGCACCGGCCCCAGCCCAGGA
TGCAAATTCGGCCTCCACTCCAGGCAGCCCCCTCTCTCCCACCGAGTATGAGCGCTTCTT
CGCACTGCTGACCCCAACCTGGAAGGCAGAGACTACCTGCCGCCTCCGGGCCACCCACGG
CTGCCGGAACCCCACCCTCGTCCAGCTGGACCAGTATGAAAACCACGGCCTGGTGCCGGA
CGGCGCTGTCTGCTCCGACCTCCCTTATGCCTCCTGGTTCGAGTCCTTTTGCCAGTTTAC
TCAGTACCGTTGCTCCAACCACGTCTACTACGCCAAGAGAGTCCGGTGCTCCCAGCCTGT
CTCAATCCTCTCACCTAACTCTCTCAAGGAGGTGGACACTTCCTCTGAAGTGCCGATCAC
CACGATGACCTCCCCCGTGTCCTCCCACATCACAGCCACAGGGCGACAGGTCTTCCAGCC
CTGGCCCGAGCGGCTCAACAACAACGTGGAGGAGCTGCTACAATCCTCCTTGTCCCTGGG
CGGCCAGGAGCAGGGCCAGGAGCACAAACAGGAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26343565|dbj|BAC35439.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26343565|dbj|BAC35439.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               83-325, gnl|bosTau2|chr5 (61381363-61381120)
               

               
               83-325, gnl|Hg17|chr12 (6626440-6626142)
               

               
               83-325, gnl|Mm7|chr6 (125076060-125076322)
               


               
               396-515, gnl|bosTau2|chr5 (61380450-61380328)
               

               
               396-515, gnl|canFam2|chr27 (41409927-41409738)
               

               
               396-515, gnl|echTel1|scaffold_317558 (37207-37408)
               

               
               396-515, gnl|hg17|chr12 (6624637-6624827)
               

               
               396-515, gnl|Hg17|chr12 (6624766-6624647)
               

               
               396-515, gnl|mm7|chr6 (125076999-125076808)
               

               
               396-515, gnl|Mm7|chr6 (125076868-125076987)
               

               
               396-515, gnl|monDom2|scaffold_31 (15044416-15044597)
               

               
               396-515, gnl|oryCun1|scaffold_203664 (50833-50644)
               

               
               396-515, gnl|panTro1|chr10 (7161350-7161540)
               

               
               396-515, gnl|rheMac2|chr11 (6813236-6813426)
               

               
               396-515, gnl|rn3|chr4 (161416736-161416547)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-325, gnl|bosTau2|chr5 (61381363-61381120)
               

               
               83-325, gnl|Hg17|chr12 (6626440-6626142)
               

               
               83-325, gnl|Mm7|chr6 (125076060-125076322)
               


               
               396-515, gnl|bosTau2|chr5 (61380450-61380328)
               

               
               396-515, gnl|canFam2|chr27 (41409927-41409738)
               

               
               396-515, gnl|echTel1|scaffold_317558 (37207-37408)
               

               
               396-515, gnl|hg17|chr12 (6624637-6624827)
               

               
               396-515, gnl|Hg17|chr12 (6624766-6624647)
               

               
               396-515, gnl|mm7|chr6 (125076999-125076808)
               

               
               396-515, gnl|Mm7|chr6 (125076868-125076987)
               

               
               396-515, gnl|monDom2|scaffold_31 (15044416-15044597)
               

               
               396-515, gnl|oryCun1|scaffold_203664 (50833-50644)
               

               
               396-515, gnl|panTro1|chr10 (7161350-7161540)
               

               
               396-515, gnl|rheMac2|chr11 (6813236-6813426)
               

               
               396-515, gnl|rn3|chr4 (161416736-161416547)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               fty (0.17584)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)

	83-325, gnl\|bosTau2\|chr5 (61381363-61381120)
	83-325, gnl\|Hg17\|chr12 (6626440-6626142)
	83-325, gnl\|Mm7\|chr6 (125076060-125076322)

	396-515, gnl\|bosTau2\|chr5 (61380450-61380328)
	396-515, gnl\|canFam2\|chr27 (41409927-41409738)
	396-515, gnl\|echTel1\|scaffold_317558 (37207-37408)
	396-515, gnl\|hg17\|chr12 (6624637-6624827)
	396-515, gnl\|Hg17\|chr12 (6624766-6624647)
	396-515, gnl\|mm7\|chr6 (125076999-125076808)
	396-515, gnl\|Mm7\|chr6 (125076868-125076987)
	396-515, gnl\|monDom2\|scaffold_31 (15044416-15044597)
	396-515, gnl\|oryCun1\|scaffold_203664 (50833-50644)
	396-515, gnl\|panTro1\|chr10 (7161350-7161540)
	396-515, gnl\|rheMac2\|chr11 (6813236-6813426)
	396-515, gnl\|rn3\|chr4 (161416736-161416547)