Non-Coding RNA Search

Ss1.1-Pig1-73K02.5

Sequence:


               
               AGAAGAGATTTGAGATGGTACACTATTCTAATCAAAAATAAAGTTTTGTAGTGGGACCAG
AAATTACTTACCCAATTCTCCACCCCCATCCCCCACCCCAACCTGATTCTGCTGGGCTGA
AAGTTCCAGATTTGCTGTCAAGGCTTTTGTTTGTCAGACCACCTGGTGTACATCCTGTGA
AGGTGCAGCCATGAACTGAAGGATGAGCCTGTAAGTGGCAGAGTGCAGGGCCTCTACCCC
AGCTGCCAGGCTGCAGGGGATCATGGCTGAGGGTAAAGTCTTTGACTGTGATGGCAGGAG
GAGCAGGTGGCTTCCTCCTAAAGGGGGACCCATTCCCACATTCTGCTAACCTGTAGTTCA
GGGACCCTGGATCCGTGGCCTGGGGTCTCCTGGTCCTCTTGCTCCCAGGTAAATGTGAAT
GGAAACAGGTATGAGAGCCTGTCCTCAACATTGATGCCCCCCCAACCCTGGCCTCACGAC
GGTGCTACCTAAGAAAGTCTTCCCTCCCCACCCCCCACTTGCCTGGTCAGTGGTCAGTGA
ATTGGAGGAGGATCCGATGGGAGTGTGTAAATGTGAGATAAAATGTCTTGGTTGTACCTG
TTTGTGGTTTAGCTTTGTATTTAAAGAAAAAAGGAAATAAACTTGAAAATTATTTGTCAT
CATAAAAATGAAACAAATTAAAATATTTATTGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGAGATTTGAGATGGTACACTATTCTAATCAAAAATAAAGTTTTGTAGTGGGACCAG
AAATTACTTACCCAATTCTCCACCCCCATCCCCCACCCCAACCTGATTCTGCTGGGCTGA
AAGTTCCAGATTTGCTGTCAAGGCTTTTGTTTGTCAGACCACCTGGTGTACATCCTGTGA
AGGTGCAGCCATGAACTGAAGGATGAGCCTGTAAGTGGCAGAGTGCAGGGCCTCTACCCC
AGCTGCCAGGCTGCAGGGGATCATGGCTGAGGGTAAAGTCTTTGACTGTGATGGCAGGAG
GAGCAGGTGGCTTCCTCCTAAAGGGGGACCCATTCCCACATTCTGCTAACCTGTAGTTCA
GGGACCCTGGATCCGTGGCCTGGGGTCTCCTGGTCCTCTTGCTCCCAGGTAAATGTGAAT
GGAAACAGGTATGAGAGCCTGTCCTCAACATTGATGCCCCCCCAACCCTGGCCTCACGAC
GGTGCTACCTAAGAAAGTCTTCCCTCCCCACCCCCCACTTGCCTGGTCAGTGGTCAGTGA
ATTGGAGGAGGATCCGATGGGAGTGTGTAAATGTGAGATAAAATGTCTTGGTTGTACCTG
TTTGTGGTTTAGCTTTGTATTTAAAGAAAAAAGGAAATAAACTTGAAAATTATTTGTCAT
CATAAAAATGAAACAAATTAAAATATTTATTGCCAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-696, gnl|bosTau2|chr17 (26437960-26438714)
               

               
               1-696, gnl|Hg17|chr12 (122418033-122418776)
               

               
               1-696, gnl|Mm7|chr5 (123707525-123708162)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-696, gnl|bosTau2|chr17 (26437960-26438714)
               

               
               1-696, gnl|Hg17|chr12 (122418033-122418776)
               

               
               1-696, gnl|Mm7|chr5 (123707525-123708162)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               hyp (0.285673)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               fat (0.147427)
               

               
               pla (0.133672)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	1-696, gnl\|bosTau2\|chr17 (26437960-26438714)
	1-696, gnl\|Hg17\|chr12 (122418033-122418776)
	1-696, gnl\|Mm7\|chr5 (123707525-123708162)

	hyp (0.285673)
	nep (0.183925)
	eye (0.170503)
	fat (0.147427)
	pla (0.133672)
	bla (0.124347)
	cty (0.10408)