Non-Coding RNA Search

Ss1.1-Pig1-73L20.5

Sequence:


               
               GCCCCAGGAAGGGGCCCATCCTCACCCTCCTGGGGTGGCCCCCTGTTCCTCCCGCCTCCC
CTGCCCCACTGCCCTGCCGGGGCAGCCCAAGTTCCCAGCTGCTGCTTGCCACCCCCTCTT
TCACCTTGACCAGCTTCAGTTCCTCTCTCGATGCTCCTGCCTCCGAAGCCTGCCCTGTTT
CCCCTTCCGTAGCCGCTTTTAAGTTATTTATTCTGTACTTGTGGTTTGGGGCTCTGAGGA
AAATCCTGATCTTTTTACCTCTTCCCCCCTTGCTAGGAGGAGGGTGGGAAGAGGGGGTGG
TCTCTGGGCTGTCAGCGGAGGGGGAGGGGTGCCGTGCCTGGGCAGTGCCCCTCCGTGGGC
CTGCCCTGCCCGCGTGCCCGCCTGCCTGGTCTACATCCTGAAGAGATGTATGGGCCCCCT
CCACGTGGGCACCATCGCTCCCGGGAGCCCAGCTGGAGGACTGCGGTCCGGGCTGGGAGC
AGAGCTGACGGACGCAGGGATGGAGTTGACCCTGAGCCATGTTCTCTGGCACTTGCTGGA
TGTGTCCCCTGCCCTCCTCCCAGGAGGAGCCACCCCACATTTGGGTAGCTAGTACCCAGG
ACTGGTTGGACTGATTTGGGTTAGGGACCCTAGAGGGTTAAGGGAACAGCAGAGATGGGG
CTTGGAACCCCGTCTGGAACCCCAATCTCCCCCTGGGGTGGTTCTGATTGTGGCTGACGC
ATGGTTACAAATTGGTTTTTAACCCAAGAATTGTGATTATTTTTTAAAAAGCCAAACGCA
TTTTGGCAGGAGTTAGAATCAACCCCGGGGCCTGGGCTCCTCTGTTCTCGGCCCTCCACA
GCCTTCTCCCTCCGAGGGGAAGCCAGAGGGAAAGGAGGATCCCAGCCGGCCTCCAGCCCG
CTCCCGAACCAAGCCTGGGGAGCAGGTTGAAGGTGAAGGGAGGAAGGCCGCGGGCCCCGC
TCCCTTCTGAGAGGCAGCTGCAGCTCAGGCCCCCAAATACCCTTTTCCCCTCTGGCCTCT
CCCTTTCCCCCTTCTGGTTGGAGGAGGGAGAAGTGGGAAGTAGTTTGGGAACTGGTTTGT
CCACATCCACTTCCCCATTGTTCCTTGGCCCGCCCTCAGGGCAGAGCCCCCTGCCCAGGC
TGGGTAAGAGATGGGCTTGGTCCAGCAGGGACCCTGAGGGAGCAAACCCCCTTCCTTCCG
GGGAGCGCGTGCCCCCCCCTACCATGTAGTTGAACAGGGGCTAGGAGCTCCCCACTCCCT
TCCTTCTAACAGCAGGCTGTGTGGGTTTCAATTCCCACCCTTCCCACCCCGGCTAGGTGT
CGTCCACCTTGTATCCTATCATGTGTCTGAGTGTGTGTGGGGGGGTTCTGTACTAATTTC
CATGGCCGGTGGCTTTTCCTTCCATGCATCACTCCCCCCCGCATGCCCAGGGGCCACCCG
CCTGGCATTACCGCATGCTGGGGTCATTGGGGGAGGGGGGTGGGGCTCACGCTGTCCTGT
GGTCTTGAAATTTTTATTTTTGCATATGTAATCCATCCTGTACAGGTAGCTAACTTTGTA
AACGCTGTGTATTCCCCCTGCCCCCATGGCTGCTGGTGTAAATAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCAGGAAGGGGCCCATCCTCACCCTCCTGGGGTGGCCCCCTGTTCCTCCCGCCTCCC
CTGCCCCACTGCCCTGCCGGGGCAGCCCAAGTTCCCAGCTGCTGCTTGCCACCCCCTCTT
TCACCTTGACCAGCTTCAGTTCCTCTCTCGATGCTCCTGCCTCCGAAGCCTGCCCTGTTT
CCCCTTCCGTAGCCGCTTTTAAGTTATTTATTCTGTACTTGTGGTTTGGGGCTCTGAGGA
AAATCCTGATCTTTTTACCTCTTCCCCCCTTGCTAGGAGGAGGGTGGGAAGAGGGGGTGG
TCTCTGGGCTGTCAGCGGAGGGGGAGGGGTGCCGTGCCTGGGCAGTGCCCCTCCGTGGGC
CTGCCCTGCCCGCGTGCCCGCCTGCCTGGTCTACATCCTGAAGAGATGTATGGGCCCCCT
CCACGTGGGCACCATCGCTCCCGGGAGCCCAGCTGGAGGACTGCGGTCCGGGCTGGGAGC
AGAGCTGACGGACGCAGGGATGGAGTTGACCCTGAGCCATGTTCTCTGGCACTTGCTGGA
TGTGTCCCCTGCCCTCCTCCCAGGAGGAGCCACCCCACATTTGGGTAGCTAGTACCCAGG
ACTGGTTGGACTGATTTGGGTTAGGGACCCTAGAGGGTTAAGGGAACAGCAGAGATGGGG
CTTGGAACCCCGTCTGGAACCCCAATCTCCCCCTGGGGTGGTTCTGATTGTGGCTGACGC
ATGGTTACAAATTGGTTTTTAACCCAAGAATTGTGATTATTTTTTAAAAAGCCAAACGCA
TTTTGGCAGGAGTTAGAATCAACCCCGGGGCCTGGGCTCCTCTGTTCTCGGCCCTCCACA
GCCTTCTCCCTCCGAGGGGAAGCCAGAGGGAAAGGAGGATCCCAGCCGGCCTCCAGCCCG
CTCCCGAACCAAGCCTGGGGAGCAGGTTGAAGGTGAAGGGAGGAAGGCCGCGGGCCCCGC
TCCCTTCTGAGAGGCAGCTGCAGCTCAGGCCCCCAAATACCCTTTTCCCCTCTGGCCTCT
CCCTTTCCCCCTTCTGGTTGGAGGAGGGAGAAGTGGGAAGTAGTTTGGGAACTGGTTTGT
CCACATCCACTTCCCCATTGTTCCTTGGCCCGCCCTCAGGGCAGAGCCCCCTGCCCAGGC
TGGGTAAGAGATGGGCTTGGTCCAGCAGGGACCCTGAGGGAGCAAACCCCCTTCCTTCCG
GGGAGCGCGTGCCCCCCCCTACCATGTAGTTGAACAGGGGCTAGGAGCTCCCCACTCCCT
TCCTTCTAACAGCAGGCTGTGTGGGTTTCAATTCCCACCCTTCCCACCCCGGCTAGGTGT
CGTCCACCTTGTATCCTATCATGTGTCTGAGTGTGTGTGGGGGGGTTCTGTACTAATTTC
CATGGCCGGTGGCTTTTCCTTCCATGCATCACTCCCCCCCGCATGCCCAGGGGCCACCCG
CCTGGCATTACCGCATGCTGGGGTCATTGGGGGAGGGGGGTGGGGCTCACGCTGTCCTGT
GGTCTTGAAATTTTTATTTTTGCATATGTAATCCATCCTGTACAGGTAGCTAACTTTGTA
AACGCTGTGTATTCCCCCTGCCCCCATGGCTGCTGGTGTAAATAAACT

Predicted RNA structure(s): 5 entry(ies)

More info

Predicted RNA structure(s): 5 entry(ies)

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               1-192, - strand, RNAz p=0.96512
               

               
               312-422, - strand, RNAz p=0.998233
               

               
               543-701, - strand, RNAz p=0.929872
               

               
               782-1298, - strand, RNAz p=0.999994
               

               
               1339-1458, - strand, RNAz p=0.852204

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-192, - strand, RNAz p=0.96512
               

               
               312-422, - strand, RNAz p=0.998233
               

               
               543-701, - strand, RNAz p=0.929872
               

               
               782-1298, - strand, RNAz p=0.999994
               

               
               1339-1458, - strand, RNAz p=0.852204

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               899-960, + strand, RNAmicro p=0.996363
               

               
               886-982, - strand, RNAmicro p=0.995765
               

               
               1367-1452, + strand, RNAmicro p=0.981539

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               899-960, + strand, RNAmicro p=0.996363
               

               
               886-982, - strand, RNAmicro p=0.995765
               

               
               1367-1452, + strand, RNAmicro p=0.981539

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               782-1297, CR853243 Normalized and Subtracted bovine endometrium tissues 
(emb|CR853243.2|), blast E-value=0, identity=90.89% 
               

               
               782-1297, AF039240 Human (J. Swensen) Homo sapiens cDNA clone 86js, mRNA 
(gb|AF039240.1|), blast E-value=0, identity=88.44% 
               

               
               782-1205, 218518 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE810017.1|), 
blast E-value=0, identity=91.98% 
               

               
               782-1297, AGENCOURT_7961177 NIH_MGC_112 Homo sapiens cDNA clone IMAGE 
(gb|BU155375.1|), blast E-value=0, identity=88.63% 
               

               
               782-1297, 17000600177044 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN335950.1|), blast E-value=0, identity=88.63% 
               

               
               814-1297, CT020014B20D01 Equine Articular Cartilage cDNA Library Equus 
(gb|CX596611.1|), blast E-value=0, identity=91.94%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               782-1297, CR853243 Normalized and Subtracted bovine endometrium tissues 
(emb|CR853243.2|), blast E-value=0, identity=90.89% 
               

               
               782-1297, AF039240 Human (J. Swensen) Homo sapiens cDNA clone 86js, mRNA 
(gb|AF039240.1|), blast E-value=0, identity=88.44% 
               

               
               782-1205, 218518 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BE810017.1|), 
blast E-value=0, identity=91.98% 
               

               
               782-1297, AGENCOURT_7961177 NIH_MGC_112 Homo sapiens cDNA clone IMAGE 
(gb|BU155375.1|), blast E-value=0, identity=88.63% 
               

               
               782-1297, 17000600177044 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN335950.1|), blast E-value=0, identity=88.63% 
               

               
               814-1297, CT020014B20D01 Equine Articular Cartilage cDNA Library Equus 
(gb|CX596611.1|), blast E-value=0, identity=91.94%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1608, gnl|bosTau2|chr19 (38102125-38103734)
               

               
               1-1608, gnl|Hg17|chr17 (39626299-39624715)
               

               
               1-1608, gnl|Mm7|chr11 (102399868-102398355)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1608, gnl|bosTau2|chr19 (38102125-38103734)
               

               
               1-1608, gnl|Hg17|chr17 (39626299-39624715)
               

               
               1-1608, gnl|Mm7|chr11 (102399868-102398355)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1-192, - strand, RNAz p=0.96512
	312-422, - strand, RNAz p=0.998233
	543-701, - strand, RNAz p=0.929872
	782-1298, - strand, RNAz p=0.999994
	1339-1458, - strand, RNAz p=0.852204

	899-960, + strand, RNAmicro p=0.996363
	886-982, - strand, RNAmicro p=0.995765
	1367-1452, + strand, RNAmicro p=0.981539

	782-1297, CR853243 Normalized and Subtracted bovine endometrium tissues (emb\|CR853243.2\|), blast E-value=0, identity=90.89%
	782-1297, AF039240 Human (J. Swensen) Homo sapiens cDNA clone 86js, mRNA (gb\|AF039240.1\|), blast E-value=0, identity=88.44%
	782-1205, 218518 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb\|BE810017.1\|), blast E-value=0, identity=91.98%
	782-1297, AGENCOURT_7961177 NIH_MGC_112 Homo sapiens cDNA clone IMAGE (gb\|BU155375.1\|), blast E-value=0, identity=88.63%
	782-1297, 17000600177044 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN335950.1\|), blast E-value=0, identity=88.63%
	814-1297, CT020014B20D01 Equine Articular Cartilage cDNA Library Equus (gb\|CX596611.1\|), blast E-value=0, identity=91.94%

	1-1608, gnl\|bosTau2\|chr19 (38102125-38103734)
	1-1608, gnl\|Hg17\|chr17 (39626299-39624715)
	1-1608, gnl\|Mm7\|chr11 (102399868-102398355)

	fce (0.271592)
	med (0.232504)
	nep (0.183925)
	ill (0.175593)
	eep (0.122564)
	cty (0.10408)
	eje (0.0988338)