Non-Coding RNA Search

Ss1.1-Pig1-73M18.5

Sequence:


               
               TAATCAGGATTATGGCTGGGTTTAGAGATGGAGAAGATTTAAAAGACTGATTGACCTTCC
GGTCGACCAAGAATCCAGGTAGGATTAAGCGGTTGGTTGACAGGCACCGTCTCTGGTGTA
GACCAAATAGGCAGAAAGTTAGGAATGGGTTGATGCTTCACTGGGTGGGAGCACTGTCTG
GAATGTTAGATGAGTCTCTGAAGCCTTGATTTACAGGCCTGCTCCTGTTACCCTGGGGCC
TGCTGGATTTGGGGGCATAGAGTGGAGGGTAAGAAGCGCTTTGAAATTGTGGGGTGGAGC
TTCAAGACAGGTCAGTGCTAGTGACTGTCACTTGGGGACTGGTAAGACAGCTCCTCTTCT
CCCTCTTTCCCTCTTACTCCCCGCGGCAGAACTGAAGGAGGGAGGGAAAGCAGAGGAGTG
ACATGAGAAGGAACCATTGTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATCAGGATTATGGCTGGGTTTAGAGATGGAGAAGATTTAAAAGACTGATTGACCTTCC
GGTCGACCAAGAATCCAGGTAGGATTAAGCGGTTGGTTGACAGGCACCGTCTCTGGTGTA
GACCAAATAGGCAGAAAGTTAGGAATGGGTTGATGCTTCACTGGGTGGGAGCACTGTCTG
GAATGTTAGATGAGTCTCTGAAGCCTTGATTTACAGGCCTGCTCCTGTTACCCTGGGGCC
TGCTGGATTTGGGGGCATAGAGTGGAGGGTAAGAAGCGCTTTGAAATTGTGGGGTGGAGC
TTCAAGACAGGTCAGTGCTAGTGACTGTCACTTGGGGACTGGTAAGACAGCTCCTCTTCT
CCCTCTTTCCCTCTTACTCCCCGCGGCAGAACTGAAGGAGGGAGGGAAAGCAGAGGAGTG
ACATGAGAAGGAACCATTGTGGGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               213-437, - strand, RNAz p=0.998626
               

               
               304-407, + strand, RNAz p=0.87903

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-437, - strand, RNAz p=0.998626
               

               
               304-407, + strand, RNAz p=0.87903

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               265-417, BP110004 ORCS bovine utero-placenta cDNA Bos taurus cDNA clone 
(dbj|BP110004.1|), blast E-value=2e-23, identity=85.99% 
               

               
               304-437, 390376 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI536126.1|), 
blast E-value=0, identity=100% 
               

               
               265-417, 964295 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK777274.1|), 
blast E-value=3e-25, identity=85.9% 
               

               
               265-417, BovGen_08319 normal cattle brain Bos taurus cDNA clone 
(gb|CO879994.1|), blast E-value=1e-27, identity=86.54% 
               

               
               271-417, 1251300 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN514231.1|), 
blast E-value=5e-24, identity=86% 
               

               
               265-417, 1317413 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528821.1|), 
blast E-value=1e-27, identity=86.54%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               265-417, BP110004 ORCS bovine utero-placenta cDNA Bos taurus cDNA clone 
(dbj|BP110004.1|), blast E-value=2e-23, identity=85.99% 
               

               
               304-437, 390376 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI536126.1|), 
blast E-value=0, identity=100% 
               

               
               265-417, 964295 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK777274.1|), 
blast E-value=3e-25, identity=85.9% 
               

               
               265-417, BovGen_08319 normal cattle brain Bos taurus cDNA clone 
(gb|CO879994.1|), blast E-value=1e-27, identity=86.54% 
               

               
               271-417, 1251300 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN514231.1|), 
blast E-value=5e-24, identity=86% 
               

               
               265-417, 1317413 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528821.1|), 
blast E-value=1e-27, identity=86.54%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_181844, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_181844, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               7-437, gnl|bosTau2|chr19 (14690864-14691293)
               

               
               7-437, gnl|canFam2|chr5 (35052477-35053179)
               

               
               7-437, gnl|dasNov1|scaffold_171867 (709-5)
               

               
               7-437, gnl|echTel1|scaffold_262582 (2735-2019)
               

               
               7-437, gnl|hg17|chr17 (6872827-6873527)
               

               
               7-437, gnl|Hg17|chr17 (6873131-6873582)
               

               
               7-437, gnl|mm7|chr11 (70306542-70305868)
               

               
               7-437, gnl|Mm7|chr11 (70306250-70305805)
               

               
               7-437, gnl|monDom2|scaffold_66 (3966341-3967065)
               

               
               7-437, gnl|oryCun1|scaffold_193645 (6823-6188)
               

               
               7-437, gnl|panTro1|chr19_random (44885269-44884569)
               

               
               7-437, gnl|rheMac2|chr16 (6742377-6743067)
               

               
               7-437, gnl|rn3|chr10 (57077637-57076944)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-437, gnl|bosTau2|chr19 (14690864-14691293)
               

               
               7-437, gnl|canFam2|chr5 (35052477-35053179)
               

               
               7-437, gnl|dasNov1|scaffold_171867 (709-5)
               

               
               7-437, gnl|echTel1|scaffold_262582 (2735-2019)
               

               
               7-437, gnl|hg17|chr17 (6872827-6873527)
               

               
               7-437, gnl|Hg17|chr17 (6873131-6873582)
               

               
               7-437, gnl|mm7|chr11 (70306542-70305868)
               

               
               7-437, gnl|Mm7|chr11 (70306250-70305805)
               

               
               7-437, gnl|monDom2|scaffold_66 (3966341-3967065)
               

               
               7-437, gnl|oryCun1|scaffold_193645 (6823-6188)
               

               
               7-437, gnl|panTro1|chr19_random (44885269-44884569)
               

               
               7-437, gnl|rheMac2|chr16 (6742377-6743067)
               

               
               7-437, gnl|rn3|chr10 (57077637-57076944)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.272628)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               nbm (0.0993246)

	213-437, - strand, RNAz p=0.998626
	304-407, + strand, RNAz p=0.87903

	265-417, BP110004 ORCS bovine utero-placenta cDNA Bos taurus cDNA clone (dbj\|BP110004.1\|), blast E-value=2e-23, identity=85.99%
	304-437, 390376 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI536126.1\|), blast E-value=0, identity=100%
	265-417, 964295 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK777274.1\|), blast E-value=3e-25, identity=85.9%
	265-417, BovGen_08319 normal cattle brain Bos taurus cDNA clone (gb\|CO879994.1\|), blast E-value=1e-27, identity=86.54%
	271-417, 1251300 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN514231.1\|), blast E-value=5e-24, identity=86%
	265-417, 1317413 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN528821.1\|), blast E-value=1e-27, identity=86.54%

	7-437, gnl\|bosTau2\|chr19 (14690864-14691293)
	7-437, gnl\|canFam2\|chr5 (35052477-35053179)
	7-437, gnl\|dasNov1\|scaffold_171867 (709-5)
	7-437, gnl\|echTel1\|scaffold_262582 (2735-2019)
	7-437, gnl\|hg17\|chr17 (6872827-6873527)
	7-437, gnl\|Hg17\|chr17 (6873131-6873582)
	7-437, gnl\|mm7\|chr11 (70306542-70305868)
	7-437, gnl\|Mm7\|chr11 (70306250-70305805)
	7-437, gnl\|monDom2\|scaffold_66 (3966341-3967065)
	7-437, gnl\|oryCun1\|scaffold_193645 (6823-6188)
	7-437, gnl\|panTro1\|chr19_random (44885269-44884569)
	7-437, gnl\|rheMac2\|chr16 (6742377-6743067)
	7-437, gnl\|rn3\|chr10 (57077637-57076944)