Non-Coding RNA Search

Ss1.1-Pig1-74B20.5

Sequence:


               
               GACACAGGTTCGATCCCCGGCCTGGCACAGTGGGTTAAGGATCCGGTATTGCCACAGGTG
CGGCTTGGGTCAAAACTGCGGCTCAGATCTGCTTCTTGGCCCAGGAACTCCCTGTGCCAC
GGGGCGGCTAAAATGGAAAACAAAACGAAAAACGTGGTTTGTCTGCAGAGTTCCAGAATC
CTCGAGCAGTGGTCAGAGCCCAGTAACGAGGGAAGGAAGGACAGCCTTGTCCCCTGCCTG
TCTTCCCAGCCCCATTTTTGTTCTGTGCCAGGCTTGTGGCATTTTGGTGCTCACAGGAGT
TCCACCTTCAGAGACAAGCTTTTCGGGCTCCTTTTCAGAGCAGGCCATTGTCACCCAAGG
CTCACTGCTGAGGCCCTAGGGCCGGGAGCTCCCTGCGTCCACAGACCAAACCACCCGGGT
AGGCACCCTCTCGGGCGAGGTCAGCTGATCTCTGCACTGTGTTTTGGTGCAGGTTTTAAT
GCATATTTTTTATATATAAATTTTTCTAAAAGGCCAAATTTGGTGTCAGGTTTTATATGC
AGGTCACTGGAATTTGTATCTCATCCCCTGATTCAATGAAGGTTTTCTTTAGACTTATTA
ATGAAACTTCTTTTCCATTAAAGGAAGATATTTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACACAGGTTCGATCCCCGGCCTGGCACAGTGGGTTAAGGATCCGGTATTGCCACAGGTG
CGGCTTGGGTCAAAACTGCGGCTCAGATCTGCTTCTTGGCCCAGGAACTCCCTGTGCCAC
GGGGCGGCTAAAATGGAAAACAAAACGAAAAACGTGGTTTGTCTGCAGAGTTCCAGAATC
CTCGAGCAGTGGTCAGAGCCCAGTAACGAGGGAAGGAAGGACAGCCTTGTCCCCTGCCTG
TCTTCCCAGCCCCATTTTTGTTCTGTGCCAGGCTTGTGGCATTTTGGTGCTCACAGGAGT
TCCACCTTCAGAGACAAGCTTTTCGGGCTCCTTTTCAGAGCAGGCCATTGTCACCCAAGG
CTCACTGCTGAGGCCCTAGGGCCGGGAGCTCCCTGCGTCCACAGACCAAACCACCCGGGT
AGGCACCCTCTCGGGCGAGGTCAGCTGATCTCTGCACTGTGTTTTGGTGCAGGTTTTAAT
GCATATTTTTTATATATAAATTTTTCTAAAAGGCCAAATTTGGTGTCAGGTTTTATATGC
AGGTCACTGGAATTTGTATCTCATCCCCTGATTCAATGAAGGTTTTCTTTAGACTTATTA
ATGAAACTTCTTTTCCATTAAAGGAAGATATTTATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               188-291, + strand, RNAz p=0.969142

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               188-291, + strand, RNAz p=0.969142

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               150-319, gnl|bosTau2|chr16 (22038466-22038297)
               

               
               150-319, gnl|canFam2|chr2 (87688152-87687991)
               

               
               150-319, gnl|dasNov1|scaffold_66289 (3568-3409)
               

               
               150-319, gnl|echTel1|scaffold_183878 (2306-2460)
               

               
               150-319, gnl|Hg17|chr1 (11282303-11282477)
               

               
               150-319, gnl|hg17|chr12 (108232747-108232908)
               

               
               150-319, gnl|mm7|chr4 (147424474-147424343)
               

               
               150-319, gnl|oryCun1|scaffold_190533 (447-317)
               

               
               150-319, gnl|panTro1|chr10 (110800530-110800691)
               

               
               150-319, gnl|rheMac2|chr11 (110353823-110353976)
               

               
               150-319, gnl|rn3|chr5 (165525849-165525709)
               


               
               339-622, gnl|bosTau2|chr16 (22038299-22038019)
               

               
               339-622, gnl|Hg17|chr1 (11282475-11282740)
               

               
               339-622, gnl|Mm7|chr4 (147424308-147424052)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-319, gnl|bosTau2|chr16 (22038466-22038297)
               

               
               150-319, gnl|canFam2|chr2 (87688152-87687991)
               

               
               150-319, gnl|dasNov1|scaffold_66289 (3568-3409)
               

               
               150-319, gnl|echTel1|scaffold_183878 (2306-2460)
               

               
               150-319, gnl|Hg17|chr1 (11282303-11282477)
               

               
               150-319, gnl|hg17|chr12 (108232747-108232908)
               

               
               150-319, gnl|mm7|chr4 (147424474-147424343)
               

               
               150-319, gnl|oryCun1|scaffold_190533 (447-317)
               

               
               150-319, gnl|panTro1|chr10 (110800530-110800691)
               

               
               150-319, gnl|rheMac2|chr11 (110353823-110353976)
               

               
               150-319, gnl|rn3|chr5 (165525849-165525709)
               


               
               339-622, gnl|bosTau2|chr16 (22038299-22038019)
               

               
               339-622, gnl|Hg17|chr1 (11282475-11282740)
               

               
               339-622, gnl|Mm7|chr4 (147424308-147424052)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nms (0.213858)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               ldo (0.0970026)

	150-319, gnl\|bosTau2\|chr16 (22038466-22038297)
	150-319, gnl\|canFam2\|chr2 (87688152-87687991)
	150-319, gnl\|dasNov1\|scaffold_66289 (3568-3409)
	150-319, gnl\|echTel1\|scaffold_183878 (2306-2460)
	150-319, gnl\|Hg17\|chr1 (11282303-11282477)
	150-319, gnl\|hg17\|chr12 (108232747-108232908)
	150-319, gnl\|mm7\|chr4 (147424474-147424343)
	150-319, gnl\|oryCun1\|scaffold_190533 (447-317)
	150-319, gnl\|panTro1\|chr10 (110800530-110800691)
	150-319, gnl\|rheMac2\|chr11 (110353823-110353976)
	150-319, gnl\|rn3\|chr5 (165525849-165525709)

	339-622, gnl\|bosTau2\|chr16 (22038299-22038019)
	339-622, gnl\|Hg17\|chr1 (11282475-11282740)
	339-622, gnl\|Mm7\|chr4 (147424308-147424052)