Ss1.1-Pig1-74L20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCAGCCAGCTCAGGGGACACGCTGTCGGAGCAGCAACTCGGAGACTCGGACATCCCGG TGATCGTGTACCGCTGTGTGGACTACATCACCCAATGCGGCCTGACTTCCGAGGGCATCT ACCGCAAGTGCGGGCAGACCTCGAAGACGCAGCGGCTGCTGGAGAGCCTGCGGCAGGACG CTCGCTCTGTGCGCCTCAAGGAGGGCGAGCAGCACGTGGACGACGTCTCCTCCGCGCTCA AGCGCTTCCTGCGAGACCTGCCCGATGGGCTCTTCACTCGAGTCCAGCGCCTCTCCTGGC TGGAGGCCTCAGAGATTGAGGATGAGGAGGAGAAGATCGCCAGGTACCGAGAGCTGCTGG CGCGCCTGCCCCCAGTCAACCGGGCCACCGTGAAGGCCCTGATCAGCCACCTGTACTGTG TCCAGTGCTTCTCTGACACGAACCAGATGAACACGCACAACCTGGCTATTGTGTTCGGGC CCACGCTCTTCCAGACAGACGGGCAGGACTACAAGGCTGGCCGTGTGGTGGAAGACCTCA TCAGCCGCTACGTGGTGGTGTTCAGTGTGGACGAGGAGGAGCTAAGGAAGCAGCGGGACG AGATCACTGCCATCGTGAAGATGCGTGTGGCTGGTACGGCCAGTGGGACCCAGCACGCTG GTGACTTCATTTGCACGGTGTACCTGGAAGAGAAGAAGGCGGAGGCAGAGCAACATATCA AGATCCCAGCATCCATGACAGCTGAGGAGCTCACGCTGGAGATCTTGGATCGCAGGAATG TGGGCATCAGGGAGAAGGACTACTGGACCTGCTTCGAGGTCAATGAGAGGGAGGAGGCAG AGCGCCCCCTGCACTTTGCGGAGAAGGTGCTGCCCATCCTGCACGGGCTGGGCACAGACA GCTACCTGGTGGTGAAGAAGCACCAGTCCATGGAGGCCATGCTGCTCTACCTGGCCAGCC ACGTGGGCGAGACCAAGCACGGCATGATGAAGTTCCGCGAGGACCGCAGCCTCCTGGGCC TGGGCCTGCCCTCAGGCGGCTTCCACGATCGCTACTTCATCCTCAACAGCAGCTGCCTGC GGCTCTACAAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCAGCCAGCTCAGGGGACACGCTGTCGGAGCAGCAACTCGGAGACTCGGACATCCCGG TGATCGTGTACCGCTGTGTGGACTACATCACCCAATGCGGCCTGACTTCCGAGGGCATCT ACCGCAAGTGCGGGCAGACCTCGAAGACGCAGCGGCTGCTGGAGAGCCTGCGGCAGGACG CTCGCTCTGTGCGCCTCAAGGAGGGCGAGCAGCACGTGGACGACGTCTCCTCCGCGCTCA AGCGCTTCCTGCGAGACCTGCCCGATGGGCTCTTCACTCGAGTCCAGCGCCTCTCCTGGC TGGAGGCCTCAGAGATTGAGGATGAGGAGGAGAAGATCGCCAGGTACCGAGAGCTGCTGG CGCGCCTGCCCCCAGTCAACCGGGCCACCGTGAAGGCCCTGATCAGCCACCTGTACTGTG TCCAGTGCTTCTCTGACACGAACCAGATGAACACGCACAACCTGGCTATTGTGTTCGGGC CCACGCTCTTCCAGACAGACGGGCAGGACTACAAGGCTGGCCGTGTGGTGGAAGACCTCA TCAGCCGCTACGTGGTGGTGTTCAGTGTGGACGAGGAGGAGCTAAGGAAGCAGCGGGACG AGATCACTGCCATCGTGAAGATGCGTGTGGCTGGTACGGCCAGTGGGACCCAGCACGCTG GTGACTTCATTTGCACGGTGTACCTGGAAGAGAAGAAGGCGGAGGCAGAGCAACATATCA AGATCCCAGCATCCATGACAGCTGAGGAGCTCACGCTGGAGATCTTGGATCGCAGGAATG TGGGCATCAGGGAGAAGGACTACTGGACCTGCTTCGAGGTCAATGAGAGGGAGGAGGCAG AGCGCCCCCTGCACTTTGCGGAGAAGGTGCTGCCCATCCTGCACGGGCTGGGCACAGACA GCTACCTGGTGGTGAAGAAGCACCAGTCCATGGAGGCCATGCTGCTCTACCTGGCCAGCC ACGTGGGCGAGACCAAGCACGGCATGATGAAGTTCCGCGAGGACCGCAGCCTCCTGGGCC TGGGCCTGCCCTCAGGCGGCTTCCACGATCGCTACTTCATCCTCAACAGCAGCTGCCTGC GGCTCTACAAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 838-952, + strand, RNAz p=0.671701 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 838-952, + strand, RNAz p=0.671701 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 99-312, gnl|bosTau2|chr15 (29381452-29381665) | |
| 99-312, gnl|canFam2|chr21 (28525027-28524860) | |
| 99-312, gnl|danRer3|chrNA (217716462-217716300) | |
| 99-312, gnl|dasNov1|scaffold_35786 (3676-3509) | |
| 99-312, gnl|echTel1|scaffold_319459 (65127-64961) | |
| 99-312, gnl|fr1|chrUn (258338008-258338169) | |
| 99-312, gnl|galGal2|chr13 (7541906-7541739) | |
| 99-312, gnl|hg17|chr11 (72085670-72085837) | |
| 99-312, gnl|Hg17|chr11 (72085889-72085676) | |
| 99-312, gnl|loxAfr1|scaffold_57497 (12580-12747) | |
| 99-312, gnl|mm7|chr7 (97446858-97446691) | |
| 99-312, gnl|Mm7|chr7 (97446637-97446850) | |
| 99-312, gnl|monDom2|scaffold_74 (5366196-5366033) | |
| 99-312, gnl|oryCun1|scaffold_211963 (9724-9887) | |
| 99-312, gnl|panTro1|chr9 (73360005-73360172) | |
| 99-312, gnl|rheMac2|chr14 (70784151-70784318) | |
| 99-312, gnl|rn3|chr1 (158979282-158979115) | |
| 99-312, gnl|tetNig1|chrUn_random (47449274-47449107) | |
| 99-312, gnl|xenTro1|scaffold_3879 (13072-12904) | |
| 412-569, gnl|bosTau2|chr15 (29382531-29382688) | |
| 412-569, gnl|canFam2|chr2 (39470844-39470973) | |
| 412-569, gnl|danRer3|chr14 (26312944-26312814) | |
| 412-569, gnl|dasNov1|scaffold_2415 (22643-22513) | |
| 412-569, gnl|fr1|chrUn (258337502-258337629) | |
| 412-569, gnl|galGal2|chr13 (7542880-7542750) | |
| 412-569, gnl|Hg17|chr11 (72084565-72084408) | |
| 412-569, gnl|hg17|chr5 (141019526-141019656) | |
| 412-569, gnl|loxAfr1|scaffold_38024 (3709-3579) | |
| 412-569, gnl|mm7|chr18 (38356379-38356509) | |
| 412-569, gnl|Mm7|chr7 (97447631-97447786) | |
| 412-569, gnl|monDom2|scaffold_6 (66951104-66950977) | |
| 412-569, gnl|panTro1|chr4 (147655589-147655719) | |
| 412-569, gnl|rheMac2|chr6 (138058231-138058361) | |
| 412-569, gnl|rn3|chr18 (30927169-30927299) | |
| 412-569, gnl|tetNig1|chrUn_random (47449722-47449588) | |
| 412-569, gnl|xenTro1|scaffold_15 (2971329-2971202) | |
| 838-952, gnl|bosTau2|chr15 (29384801-29384915) | |
| 838-952, gnl|Hg17|chr11 (72082501-72082387) | |
| 838-952, gnl|Mm7|chr7 (97450208-97450322) | |
| 954-1092, gnl|bosTau2|chr15 (29385169-29385307) | |
| 954-1092, gnl|canFam2|chr21 (28528771-28528602) | |
| 954-1092, gnl|danRer3|chrNA (217734012-217734165) | |
| 954-1092, gnl|dasNov1|scaffold_35786 (7285-7118) | |
| 954-1092, gnl|echTel1|scaffold_319459 (68081-67905) | |
| 954-1092, gnl|galGal2|chr13 (7544166-7544002) | |
| 954-1092, gnl|hg17|chr11 (72082001-72082170) | |
| 954-1092, gnl|Hg17|chr11 (72082164-72082026) | |
| 954-1092, gnl|loxAfr1|scaffold_57497 (8856-9037) | |
| 954-1092, gnl|mm7|chr7 (97450686-97450521) | |
| 954-1092, gnl|Mm7|chr7 (97450525-97450663) | |
| 954-1092, gnl|monDom2|scaffold_74 (5378464-5378307) | |
| 954-1092, gnl|oryCun1|scaffold_184056 (436-267) | |
| 954-1092, gnl|panTro1|chr9 (73356336-73356505) | |
| 954-1092, gnl|rheMac2|chr14 (70780446-70780615) | |
| 954-1092, gnl|rn3|chr1 (158983744-158983579) | |
| 954-1092, gnl|xenTro1|scaffold_964 (102732-102584) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 99-312, gnl|bosTau2|chr15 (29381452-29381665) | |
| 99-312, gnl|canFam2|chr21 (28525027-28524860) | |
| 99-312, gnl|danRer3|chrNA (217716462-217716300) | |
| 99-312, gnl|dasNov1|scaffold_35786 (3676-3509) | |
| 99-312, gnl|echTel1|scaffold_319459 (65127-64961) | |
| 99-312, gnl|fr1|chrUn (258338008-258338169) | |
| 99-312, gnl|galGal2|chr13 (7541906-7541739) | |
| 99-312, gnl|hg17|chr11 (72085670-72085837) | |
| 99-312, gnl|Hg17|chr11 (72085889-72085676) | |
| 99-312, gnl|loxAfr1|scaffold_57497 (12580-12747) | |
| 99-312, gnl|mm7|chr7 (97446858-97446691) | |
| 99-312, gnl|Mm7|chr7 (97446637-97446850) | |
| 99-312, gnl|monDom2|scaffold_74 (5366196-5366033) | |
| 99-312, gnl|oryCun1|scaffold_211963 (9724-9887) | |
| 99-312, gnl|panTro1|chr9 (73360005-73360172) | |
| 99-312, gnl|rheMac2|chr14 (70784151-70784318) | |
| 99-312, gnl|rn3|chr1 (158979282-158979115) | |
| 99-312, gnl|tetNig1|chrUn_random (47449274-47449107) | |
| 99-312, gnl|xenTro1|scaffold_3879 (13072-12904) | |
| 412-569, gnl|bosTau2|chr15 (29382531-29382688) | |
| 412-569, gnl|canFam2|chr2 (39470844-39470973) | |
| 412-569, gnl|danRer3|chr14 (26312944-26312814) | |
| 412-569, gnl|dasNov1|scaffold_2415 (22643-22513) | |
| 412-569, gnl|fr1|chrUn (258337502-258337629) | |
| 412-569, gnl|galGal2|chr13 (7542880-7542750) | |
| 412-569, gnl|Hg17|chr11 (72084565-72084408) | |
| 412-569, gnl|hg17|chr5 (141019526-141019656) | |
| 412-569, gnl|loxAfr1|scaffold_38024 (3709-3579) | |
| 412-569, gnl|mm7|chr18 (38356379-38356509) | |
| 412-569, gnl|Mm7|chr7 (97447631-97447786) | |
| 412-569, gnl|monDom2|scaffold_6 (66951104-66950977) | |
| 412-569, gnl|panTro1|chr4 (147655589-147655719) | |
| 412-569, gnl|rheMac2|chr6 (138058231-138058361) | |
| 412-569, gnl|rn3|chr18 (30927169-30927299) | |
| 412-569, gnl|tetNig1|chrUn_random (47449722-47449588) | |
| 412-569, gnl|xenTro1|scaffold_15 (2971329-2971202) | |
| 838-952, gnl|bosTau2|chr15 (29384801-29384915) | |
| 838-952, gnl|Hg17|chr11 (72082501-72082387) | |
| 838-952, gnl|Mm7|chr7 (97450208-97450322) | |
| 954-1092, gnl|bosTau2|chr15 (29385169-29385307) | |
| 954-1092, gnl|canFam2|chr21 (28528771-28528602) | |
| 954-1092, gnl|danRer3|chrNA (217734012-217734165) | |
| 954-1092, gnl|dasNov1|scaffold_35786 (7285-7118) | |
| 954-1092, gnl|echTel1|scaffold_319459 (68081-67905) | |
| 954-1092, gnl|galGal2|chr13 (7544166-7544002) | |
| 954-1092, gnl|hg17|chr11 (72082001-72082170) | |
| 954-1092, gnl|Hg17|chr11 (72082164-72082026) | |
| 954-1092, gnl|loxAfr1|scaffold_57497 (8856-9037) | |
| 954-1092, gnl|mm7|chr7 (97450686-97450521) | |
| 954-1092, gnl|Mm7|chr7 (97450525-97450663) | |
| 954-1092, gnl|monDom2|scaffold_74 (5378464-5378307) | |
| 954-1092, gnl|oryCun1|scaffold_184056 (436-267) | |
| 954-1092, gnl|panTro1|chr9 (73356336-73356505) | |
| 954-1092, gnl|rheMac2|chr14 (70780446-70780615) | |
| 954-1092, gnl|rn3|chr1 (158983744-158983579) | |
| 954-1092, gnl|xenTro1|scaffold_964 (102732-102584) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) | |
| eru (0.120048) | |
| ebs (0.118301) |