Ss1.1-Pig1-74O02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCTGACTGCAGGTACGAAGTTTTCCCGCAGCTGGCTCCCGACTTTTCTCTTTTCAGCCGC GGGGAGAGCTTGGGGCTGCAGGTGAGCTGTACGTCTCGCAACTTATACCTTCCTGCCCGT AATTTAATGCAAAGGCGCAGAAATAGATAACAATGCGAAGAACCTTGGGAGGATTTTGCA GGGGGTGGGGTCAGCTCTCCCAGGTATCGCTTCTCTTCTGCCTGGGAATTCTCCGAATTT CTTCCTTCCACGGCCCTGAATCTCCCATTTGTCCTCCCTGGACACTTGTCCTCCCTGGAG TTCCTGGAGCTACGGAGAGGTGGGGAAGGGGGTGGAGATCTTGGACCATCACAGAAATGC GACTGCAGGTACGAAGTTTTCCCGCAGCTGGCTCCCGACTTTTCTCTTTTCAGCCGCGGG GAGAGCTTGGGGCTGCAGAGTTAAACCTTGCCAATGGACCTGATTGGTTTTGGTTATGCA GCCCTGGTGACGTTCGGAAGCATTTTGGGCTATAAGCGGAGAGGTGGTGTTCCGTCTTTG ATTGCTGGTCTTTTTGTTGGCTTTTTGGCTGGCTATGGAGCTTACCGTGTCTCCCTTGAC AAGCGAGATGTAAAACTGTCCCTGTTTACAGCTTTCTTCCTGGCCACCATAATGGGGGTG AGGTTTAAGCGATCCAAGAAAATAATGCCAGCTGGGCTGGTTGCAGGTTTGAGCCTCCTG ATGATCCTGAGACTTGTCTTATTGCTGCTCTGAGAATCCAGAGGAACTGAAATCTAAATT CTCGTCATTCTACCATAACGGGCAAAGCCTCCTCTTTGTATTGAAAAGATAAATTTCGAT AATGAAGGTTCAACATGGTCTTATTTTATGTTAGAAACTACAACAGAAACACTGTCACTT CTAATATGGACACTAGTTTGGTTTTTTTTTTTTTTTAAGCAAATGGTTTAACTGTTTTCT AACTGTCTGATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCTGACTGCAGGTACGAAGTTTTCCCGCAGCTGGCTCCCGACTTTTCTCTTTTCAGCCGC GGGGAGAGCTTGGGGCTGCAGGTGAGCTGTACGTCTCGCAACTTATACCTTCCTGCCCGT AATTTAATGCAAAGGCGCAGAAATAGATAACAATGCGAAGAACCTTGGGAGGATTTTGCA GGGGGTGGGGTCAGCTCTCCCAGGTATCGCTTCTCTTCTGCCTGGGAATTCTCCGAATTT CTTCCTTCCACGGCCCTGAATCTCCCATTTGTCCTCCCTGGACACTTGTCCTCCCTGGAG TTCCTGGAGCTACGGAGAGGTGGGGAAGGGGGTGGAGATCTTGGACCATCACAGAAATGC GACTGCAGGTACGAAGTTTTCCCGCAGCTGGCTCCCGACTTTTCTCTTTTCAGCCGCGGG GAGAGCTTGGGGCTGCAGAGTTAAACCTTGCCAATGGACCTGATTGGTTTTGGTTATGCA GCCCTGGTGACGTTCGGAAGCATTTTGGGCTATAAGCGGAGAGGTGGTGTTCCGTCTTTG ATTGCTGGTCTTTTTGTTGGCTTTTTGGCTGGCTATGGAGCTTACCGTGTCTCCCTTGAC AAGCGAGATGTAAAACTGTCCCTGTTTACAGCTTTCTTCCTGGCCACCATAATGGGGGTG AGGTTTAAGCGATCCAAGAAAATAATGCCAGCTGGGCTGGTTGCAGGTTTGAGCCTCCTG ATGATCCTGAGACTTGTCTTATTGCTGCTCTGAGAATCCAGAGGAACTGAAATCTAAATT CTCGTCATTCTACCATAACGGGCAAAGCCTCCTCTTTGTATTGAAAAGATAAATTTCGAT AATGAAGGTTCAACATGGTCTTATTTTATGTTAGAAACTACAACAGAAACACTGTCACTT CTAATATGGACACTAGTTTGGTTTTTTTTTTTTTTTAAGCAAATGGTTTAACTGTTTTCT AACTGTCTGATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 228-346, - strand, RNAz p=0.718258 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 228-346, - strand, RNAz p=0.718258 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 9-360, gnl|bosTau2|chr23 (22837431-22837084) | |
| 9-360, gnl|Hg17|chr6 (52643930-52644300) | |
| 522-640, gnl|bosTau2|chr23 (22830956-22830837) | |
| 522-640, gnl|canFam2|chr12 (23313954-23314065) | |
| 522-640, gnl|dasNov1|scaffold_14404 (16321-16210) | |
| 522-640, gnl|echTel1|scaffold_285760 (64693-64601) | |
| 522-640, gnl|hg17|chr6 (52654568-52654679) | |
| 522-640, gnl|Hg17|chr6 (52654568-52654689) | |
| 522-640, gnl|loxAfr1|scaffold_8181 (62862-62973) | |
| 522-640, gnl|mm7|chr1 (21420615-21420726) | |
| 522-640, gnl|Mm7|chr1 (21420615-21420736) | |
| 522-640, gnl|monDom2|scaffold_0 (184464828-184464717) | |
| 522-640, gnl|oryCun1|scaffold_93865 (706-595) | |
| 522-640, gnl|panTro1|chr5 (53672749-53672860) | |
| 522-640, gnl|rheMac2|chr4 (52353391-52353502) | |
| 522-640, gnl|rn3|chr9 (19994714-19994825) | |
| 522-640, gnl|tetNig1|chr17 (4506758-4506647) | |
| 712-971, gnl|bosTau2|chr23 (22827718-22827453) | |
| 712-971, gnl|canFam2|chr12 (23318774-23319164) | |
| 712-971, gnl|dasNov1|scaffold_14404 (12873-12501) | |
| 712-971, gnl|echTel1|scaffold_315437 (38851-38475) | |
| 712-971, gnl|hg17|chr6 (52658706-52659072) | |
| 712-971, gnl|Hg17|chr6 (52658765-52659001) | |
| 712-971, gnl|loxAfr1|scaffold_8181 (66279-66656) | |
| 712-971, gnl|mm7|chr1 (21478271-21478559) | |
| 712-971, gnl|Mm7|chr1 (21424261-21424518) | |
| 712-971, gnl|monDom2|scaffold_0 (184461387-184460962) | |
| 712-971, gnl|oryCun1|scaffold_205357 (58226-57886) | |
| 712-971, gnl|panTro1|chr5 (53676869-53677234) | |
| 712-971, gnl|rheMac2|chr4 (52357555-52357920) | |
| 712-971, gnl|rn3|chr9 (19995995-19996375) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-360, gnl|bosTau2|chr23 (22837431-22837084) | |
| 9-360, gnl|Hg17|chr6 (52643930-52644300) | |
| 522-640, gnl|bosTau2|chr23 (22830956-22830837) | |
| 522-640, gnl|canFam2|chr12 (23313954-23314065) | |
| 522-640, gnl|dasNov1|scaffold_14404 (16321-16210) | |
| 522-640, gnl|echTel1|scaffold_285760 (64693-64601) | |
| 522-640, gnl|hg17|chr6 (52654568-52654679) | |
| 522-640, gnl|Hg17|chr6 (52654568-52654689) | |
| 522-640, gnl|loxAfr1|scaffold_8181 (62862-62973) | |
| 522-640, gnl|mm7|chr1 (21420615-21420726) | |
| 522-640, gnl|Mm7|chr1 (21420615-21420736) | |
| 522-640, gnl|monDom2|scaffold_0 (184464828-184464717) | |
| 522-640, gnl|oryCun1|scaffold_93865 (706-595) | |
| 522-640, gnl|panTro1|chr5 (53672749-53672860) | |
| 522-640, gnl|rheMac2|chr4 (52353391-52353502) | |
| 522-640, gnl|rn3|chr9 (19994714-19994825) | |
| 522-640, gnl|tetNig1|chr17 (4506758-4506647) | |
| 712-971, gnl|bosTau2|chr23 (22827718-22827453) | |
| 712-971, gnl|canFam2|chr12 (23318774-23319164) | |
| 712-971, gnl|dasNov1|scaffold_14404 (12873-12501) | |
| 712-971, gnl|echTel1|scaffold_315437 (38851-38475) | |
| 712-971, gnl|hg17|chr6 (52658706-52659072) | |
| 712-971, gnl|Hg17|chr6 (52658765-52659001) | |
| 712-971, gnl|loxAfr1|scaffold_8181 (66279-66656) | |
| 712-971, gnl|mm7|chr1 (21478271-21478559) | |
| 712-971, gnl|Mm7|chr1 (21424261-21424518) | |
| 712-971, gnl|monDom2|scaffold_0 (184461387-184460962) | |
| 712-971, gnl|oryCun1|scaffold_205357 (58226-57886) | |
| 712-971, gnl|panTro1|chr5 (53676869-53677234) | |
| 712-971, gnl|rheMac2|chr4 (52357555-52357920) | |
| 712-971, gnl|rn3|chr9 (19995995-19996375) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| mgp (0.461361) | |
| nlu (0.383362) | |
| ova (0.258264) | |
| sin (0.174948) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.461361) | |
| nlu (0.383362) | |
| ova (0.258264) | |
| sin (0.174948) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| bla (0.124347) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| jca (0.11396) |