Ss1.1-Pig1-75B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTGTTACACATACTCCATGGTAGCCGTCCCCTTGTATGAAACCTTGGGAGCAGAGGCC ATCAAATACATTATCAACAAAGCTGAGATTGCCACAGTGATCTGTGATAAGCCCGAAAAG GCATTGATCCTGATTAAGGATATGGAGAAGGGCCTCATCCCAAGCCTGAAAATGATCATC ATCATGGATCCCTTTGAGGATGACCTGAAGGAGAGAGGGGAGAAAAGTGGAATTGAGATC TTATCCCTGCTTGATGCCGAGAACATAGGAAAAGAGAACTTCAGAAAACCTGTGCCTCCT TCACCAGAAGATCTGAGCATCGTCTGCTTCACCAGTGGGACCACAGGTGACCCCAAAGGA GCCATGATAACCCATCAAAATATTGTTTCAAATGTTGCTTCTTTTCTCAAACGTCTGGAG TACACTTTTCAGCCCACCCCTGAGGACGTGTCCATATCCTACCTCCCCTTGGCTCATATG TTTGATAGGATTGTACAGGCTATTATGTTCTCTTGTGGAGCCAGAGTTGGATTCTTCCAA GGAGATATTCAGTTGCTGCCTGATGACATGAAGACTCTGAAGCCCACACTATTTCCCTGT GGTGCCTCGACTCCTTAATAAGATTTATGATAAGGTACAAAGTGAAGCTAAGTCACCCCT GAAGAAATTCTTGTTGAACTTGGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTGTTACACATACTCCATGGTAGCCGTCCCCTTGTATGAAACCTTGGGAGCAGAGGCC ATCAAATACATTATCAACAAAGCTGAGATTGCCACAGTGATCTGTGATAAGCCCGAAAAG GCATTGATCCTGATTAAGGATATGGAGAAGGGCCTCATCCCAAGCCTGAAAATGATCATC ATCATGGATCCCTTTGAGGATGACCTGAAGGAGAGAGGGGAGAAAAGTGGAATTGAGATC TTATCCCTGCTTGATGCCGAGAACATAGGAAAAGAGAACTTCAGAAAACCTGTGCCTCCT TCACCAGAAGATCTGAGCATCGTCTGCTTCACCAGTGGGACCACAGGTGACCCCAAAGGA GCCATGATAACCCATCAAAATATTGTTTCAAATGTTGCTTCTTTTCTCAAACGTCTGGAG TACACTTTTCAGCCCACCCCTGAGGACGTGTCCATATCCTACCTCCCCTTGGCTCATATG TTTGATAGGATTGTACAGGCTATTATGTTCTCTTGTGGAGCCAGAGTTGGATTCTTCCAA GGAGATATTCAGTTGCTGCCTGATGACATGAAGACTCTGAAGCCCACACTATTTCCCTGT GGTGCCTCGACTCCTTAATAAGATTTATGATAAGGTACAAAGTGAAGCTAAGTCACCCCT GAAGAAATTCTTGTTGAACTTGGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 94-250, - strand, RNAz p=0.671896 | |
| 120-261, - strand, RNAz p=0.858273 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 94-250, - strand, RNAz p=0.671896 | |
| 120-261, - strand, RNAz p=0.858273 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 81-261, gnl|bosTau2|chr26 (21332088-21332268) | |
| 81-261, gnl|canFam2|chr28 (26464922-26465147) | |
| 81-261, gnl|danRer3|chr12 (29108591-29108774) | |
| 81-261, gnl|dasNov1|scaffold_2449 (58945-58730) | |
| 81-261, gnl|echTel1|scaffold_309526 (3995-3791) | |
| 81-261, gnl|fr1|chrUn (288120692-288120888) | |
| 81-261, gnl|hg17|chr10 (114159234-114159459) | |
| 81-261, gnl|Hg17|chr10 (114159253-114159433) | |
| 81-261, gnl|loxAfr1|scaffold_4278 (48875-49099) | |
| 81-261, gnl|mm7|chr19 (55194654-55194877) | |
| 81-261, gnl|Mm7|chr19 (55194673-55194853) | |
| 81-261, gnl|monDom2|scaffold_14 (50127034-50126814) | |
| 81-261, gnl|oryCun1|scaffold_202054 (37841-37625) | |
| 81-261, gnl|panTro1|chr8 (116086555-116086780) | |
| 81-261, gnl|rheMac2|chr9 (112070146-112070371) | |
| 81-261, gnl|rn3|chr1 (261795368-261795591) | |
| 81-261, gnl|tetNig1|chr2 (1027754-1027948) | |
| 497-638, gnl|bosTau2|chr26 (21336989-21337129) | |
| 497-638, gnl|canFam2|chr28 (26468923-26469100) | |
| 497-638, gnl|danRer3|chr12 (29109565-29109751) | |
| 497-638, gnl|dasNov1|scaffold_1276 (165306-165132) | |
| 497-638, gnl|echTel1|scaffold_309526 (1263-1086) | |
| 497-638, gnl|fr1|chrUn (288121492-288121634) | |
| 497-638, gnl|galGal2|chr6 (25777527-25777707) | |
| 497-638, gnl|hg17|chr10 (114162899-114163075) | |
| 497-638, gnl|Hg17|chr10 (114162919-114163059) | |
| 497-638, gnl|loxAfr1|scaffold_4278 (52646-52809) | |
| 497-638, gnl|mm7|chr19 (55198617-55198792) | |
| 497-638, gnl|Mm7|chr19 (55198635-55198775) | |
| 497-638, gnl|monDom2|scaffold_14 (50119362-50119213) | |
| 497-638, gnl|oryCun1|scaffold_202054 (33342-33165) | |
| 497-638, gnl|panTro1|chr8 (116090179-116090355) | |
| 497-638, gnl|rheMac2|chr9 (112073764-112073940) | |
| 497-638, gnl|rn3|chr1 (261799345-261799520) | |
| 497-638, gnl|tetNig1|chr2 (1028587-1028730) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 81-261, gnl|bosTau2|chr26 (21332088-21332268) | |
| 81-261, gnl|canFam2|chr28 (26464922-26465147) | |
| 81-261, gnl|danRer3|chr12 (29108591-29108774) | |
| 81-261, gnl|dasNov1|scaffold_2449 (58945-58730) | |
| 81-261, gnl|echTel1|scaffold_309526 (3995-3791) | |
| 81-261, gnl|fr1|chrUn (288120692-288120888) | |
| 81-261, gnl|hg17|chr10 (114159234-114159459) | |
| 81-261, gnl|Hg17|chr10 (114159253-114159433) | |
| 81-261, gnl|loxAfr1|scaffold_4278 (48875-49099) | |
| 81-261, gnl|mm7|chr19 (55194654-55194877) | |
| 81-261, gnl|Mm7|chr19 (55194673-55194853) | |
| 81-261, gnl|monDom2|scaffold_14 (50127034-50126814) | |
| 81-261, gnl|oryCun1|scaffold_202054 (37841-37625) | |
| 81-261, gnl|panTro1|chr8 (116086555-116086780) | |
| 81-261, gnl|rheMac2|chr9 (112070146-112070371) | |
| 81-261, gnl|rn3|chr1 (261795368-261795591) | |
| 81-261, gnl|tetNig1|chr2 (1027754-1027948) | |
| 497-638, gnl|bosTau2|chr26 (21336989-21337129) | |
| 497-638, gnl|canFam2|chr28 (26468923-26469100) | |
| 497-638, gnl|danRer3|chr12 (29109565-29109751) | |
| 497-638, gnl|dasNov1|scaffold_1276 (165306-165132) | |
| 497-638, gnl|echTel1|scaffold_309526 (1263-1086) | |
| 497-638, gnl|fr1|chrUn (288121492-288121634) | |
| 497-638, gnl|galGal2|chr6 (25777527-25777707) | |
| 497-638, gnl|hg17|chr10 (114162899-114163075) | |
| 497-638, gnl|Hg17|chr10 (114162919-114163059) | |
| 497-638, gnl|loxAfr1|scaffold_4278 (52646-52809) | |
| 497-638, gnl|mm7|chr19 (55198617-55198792) | |
| 497-638, gnl|Mm7|chr19 (55198635-55198775) | |
| 497-638, gnl|monDom2|scaffold_14 (50119362-50119213) | |
| 497-638, gnl|oryCun1|scaffold_202054 (33342-33165) | |
| 497-638, gnl|panTro1|chr8 (116090179-116090355) | |
| 497-638, gnl|rheMac2|chr9 (112073764-112073940) | |
| 497-638, gnl|rn3|chr1 (261799345-261799520) | |
| 497-638, gnl|tetNig1|chr2 (1028587-1028730) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jej (0.0989218) | |
| eje (0.0988338) |