Non-Coding RNA Search

Ss1.1-Pig1-76E04.5

Sequence:


               
               CGGACGCGTGGGCTACTCCCACTGTCAGGTGCAGGCTACCTGGGCACGTGTGTGCACGTG
GTAAGAAGAAGCCTGGAATTCAACGCTCTGGTTACCATTTACCATTCCTGGCATTTCTTT
GTCTCTACAAGCTTCAGTTCCTCCATTGGTAAAGCGAATCCCTGCCTGCCTTTGCGGACA
GGAATGGCATGAAAGGGTTTATAAACATGCTCCGAAAACAAATTTGTCTTGAAGCACAGA
TCTAGAAATAAAAGACCCTGAGACCCCAAAATCTGCAGTTGCCACAGCCCCGCCGAATGT
GCATACGTGGATTCTGCAAATAACCAAAGCTGTGACTTTCAATTCTATTAGTAAAGAACC
ACTTTATAGCATAACACTGTAAATCAACTATACTTCAATAAAAATTTTATTTCTCTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGACGCGTGGGCTACTCCCACTGTCAGGTGCAGGCTACCTGGGCACGTGTGTGCACGTG
GTAAGAAGAAGCCTGGAATTCAACGCTCTGGTTACCATTTACCATTCCTGGCATTTCTTT
GTCTCTACAAGCTTCAGTTCCTCCATTGGTAAAGCGAATCCCTGCCTGCCTTTGCGGACA
GGAATGGCATGAAAGGGTTTATAAACATGCTCCGAAAACAAATTTGTCTTGAAGCACAGA
TCTAGAAATAAAAGACCCTGAGACCCCAAAATCTGCAGTTGCCACAGCCCCGCCGAATGT
GCATACGTGGATTCTGCAAATAACCAAAGCTGTGACTTTCAATTCTATTAGTAAAGAACC
ACTTTATAGCATAACACTGTAAATCAACTATACTTCAATAAAAATTTTATTTCTCTTTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               96-249, - strand, RNAz p=0.998749

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               96-249, - strand, RNAz p=0.998749

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               22-345, gnl|bosTau2|chr16 (21531648-21531972)
               

               
               22-345, gnl|Hg17|chr1 (11781371-11781088)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-345, gnl|bosTau2|chr16 (21531648-21531972)
               

               
               22-345, gnl|Hg17|chr1 (11781371-11781088)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eru (0.120048)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)

	22-345, gnl\|bosTau2\|chr16 (21531648-21531972)
	22-345, gnl\|Hg17\|chr1 (11781371-11781088)