Non-Coding RNA Search

Ss1.1-Pig1-76H14.5

Sequence:


               
               TGTAGAGTCACTGCTGCTGTGATATGTGTCCTGGCGCTCANTAACCGGGAGACTTTCCTA
GGAGAGCAGGACCAGAGCCCCCCCGTTCCATTAGAAGGACTCATCCTGCTGGGGCCTGAA
GCCAGTCCCGCCGGGTAGGACACTGGATGCCTCTCTCCTTCATCCAAGCACACTGCTCTC
CACAGATGCAGAAAACACCAAATAAGCCTGTGTCTTCTTTGAATTAGGATAAGCAGTCCC
AGAAGTGGCCTATCCTCGACTTGGAAGGAAGCATTTTCTGTTTCACCAGCCCTCATGCTT
CCGAGACCATGGTGGAAACCAAACAGAATCTAAAGTGCCTGGTCAGCCTCCCTCTGTCTC
AGGAAGAAATTTGCTAATCCTGACACGAAGACTCTCCCCCCGGAGTTTGTATTTGAGCAG
GGCTCTTATTCTTCAGGTCCGCCCCACATAGGAAGCGTGCTTGGGAACTGGGAAACCATG
AACTTTGCCTTTTAAGAGAGCGATTGAAGACCAGCCTTACAGCCCTTGCTCCTCCCAGTG
CACCTTGGCCCTTAAAGCCCTGGTGAATCAGGAGACACCTGTGGACTCCTGGCCCCATGA
GTCTGCTGGGTCGGTCAGAAGGCAGCAACACAAAAGTCTCTTGTGAATAGTGTTTATATC
TAGAGATGTTTATATTTAAGTAGCTATTTTATAAATAAAAGCATTTCAAAGGGAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAGAGTCACTGCTGCTGTGATATGTGTCCTGGCGCTCANTAACCGGGAGACTTTCCTA
GGAGAGCAGGACCAGAGCCCCCCCGTTCCATTAGAAGGACTCATCCTGCTGGGGCCTGAA
GCCAGTCCCGCCGGGTAGGACACTGGATGCCTCTCTCCTTCATCCAAGCACACTGCTCTC
CACAGATGCAGAAAACACCAAATAAGCCTGTGTCTTCTTTGAATTAGGATAAGCAGTCCC
AGAAGTGGCCTATCCTCGACTTGGAAGGAAGCATTTTCTGTTTCACCAGCCCTCATGCTT
CCGAGACCATGGTGGAAACCAAACAGAATCTAAAGTGCCTGGTCAGCCTCCCTCTGTCTC
AGGAAGAAATTTGCTAATCCTGACACGAAGACTCTCCCCCCGGAGTTTGTATTTGAGCAG
GGCTCTTATTCTTCAGGTCCGCCCCACATAGGAAGCGTGCTTGGGAACTGGGAAACCATG
AACTTTGCCTTTTAAGAGAGCGATTGAAGACCAGCCTTACAGCCCTTGCTCCTCCCAGTG
CACCTTGGCCCTTAAAGCCCTGGTGAATCAGGAGACACCTGTGGACTCCTGGCCCCATGA
GTCTGCTGGGTCGGTCAGAAGGCAGCAACACAAAAGTCTCTTGTGAATAGTGTTTATATC
TAGAGATGTTTATATTTAAGTAGCTATTTTATAAATAAAAGCATTTCAAAGGGAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               339-456, - strand, RNAz p=0.620045

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-456, - strand, RNAz p=0.620045

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               38-712, gnl|bosTau2|chr26 (12152846-12153511)
               

               
               38-712, gnl|canFam2|chr28 (15747967-15748510)
               

               
               38-712, gnl|dasNov1|scaffold_12527 (11162-11717)
               

               
               38-712, gnl|echTel1|scaffold_315429 (3696-4177)
               

               
               38-712, gnl|hg17|chr10 (101625274-101625808)
               

               
               38-712, gnl|Hg17|chr10 (101625969-101625325)
               

               
               38-712, gnl|mm7|chr19 (43740649-43741132)
               

               
               38-712, gnl|Mm7|chr19 (43741284-43740694)
               

               
               38-712, gnl|oryCun1|scaffold_121201 (4154-3680)
               

               
               38-712, gnl|panTro1|chr8 (103364665-103365200)
               

               
               38-712, gnl|rheMac2|chr9 (99488992-99489487)
               

               
               38-712, gnl|rn3|chr1_random (3608972-3609428)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-712, gnl|bosTau2|chr26 (12152846-12153511)
               

               
               38-712, gnl|canFam2|chr28 (15747967-15748510)
               

               
               38-712, gnl|dasNov1|scaffold_12527 (11162-11717)
               

               
               38-712, gnl|echTel1|scaffold_315429 (3696-4177)
               

               
               38-712, gnl|hg17|chr10 (101625274-101625808)
               

               
               38-712, gnl|Hg17|chr10 (101625969-101625325)
               

               
               38-712, gnl|mm7|chr19 (43740649-43741132)
               

               
               38-712, gnl|Mm7|chr19 (43741284-43740694)
               

               
               38-712, gnl|oryCun1|scaffold_121201 (4154-3680)
               

               
               38-712, gnl|panTro1|chr8 (103364665-103365200)
               

               
               38-712, gnl|rheMac2|chr9 (99488992-99489487)
               

               
               38-712, gnl|rn3|chr1_random (3608972-3609428)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.29274)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)

	38-712, gnl\|bosTau2\|chr26 (12152846-12153511)
	38-712, gnl\|canFam2\|chr28 (15747967-15748510)
	38-712, gnl\|dasNov1\|scaffold_12527 (11162-11717)
	38-712, gnl\|echTel1\|scaffold_315429 (3696-4177)
	38-712, gnl\|hg17\|chr10 (101625274-101625808)
	38-712, gnl\|Hg17\|chr10 (101625969-101625325)
	38-712, gnl\|mm7\|chr19 (43740649-43741132)
	38-712, gnl\|Mm7\|chr19 (43741284-43740694)
	38-712, gnl\|oryCun1\|scaffold_121201 (4154-3680)
	38-712, gnl\|panTro1\|chr8 (103364665-103365200)
	38-712, gnl\|rheMac2\|chr9 (99488992-99489487)
	38-712, gnl\|rn3\|chr1_random (3608972-3609428)